README.md

main.nf

nextflow.config

pipeline/inputs.nf

pipeline/main.nf

pipeline/validation.nf

pipeline/var_calling.nf

tests/assets/input_data/ped_files/giab_test_non_trios.ped

tests/assets/input_data/ped_files/giab_test_trios.ped

tests/assets/input_data/sample_sheets/batch_1.tsv

tests/assets/input_data/sample_sheets/batch_2_md5_errors.tsv

...s/assets/input_data/sample_sheets/giab_test_non_trios.tsv

tests/assets/input_data/sample_sheets/giab_test_trios.tsv

tests/run_giab_tests.sh

tests/run_tests.sh

tests/scripts/nextflow_detached.sh