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NextFlow

Merged NextFlow
mwham_develop into master
Merged mwham requested to merge mwham_develop into master

Initial commit of basic structure for automated NextFlow pipeline:

  • Pipeline source files in pipeline/
  • Test script in tests/run_tests.sh
  • Test data in tests/assets/
  • Conda environment.yml file - may change in future
  • Readme documentation
  • gitlab-ci.yml build script

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