Explore projects
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Repo of material from the 2022 Physics PhD student workshop.
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sgrannem / diffBUM-HMM
GNU General Public License v3.0 onlyUpdated -
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sgrannem / pyCRAC
Apache License 2.0Python software for processing CRAC and CLIP type data. Compatible with Python 2 and 3.
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sgrannem / CRAC Pipelines
Apache License 2.0Contains ruffus pipelines for running the entire single-end or paired-end CRAC pipelines.
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A toolbox of utilities and demonstrations to support signals and systems teaching in the School of Engineering
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s2450521 / clustree
GNU General Public License v3.0 or laterIn development: Visualize clusterings at different resolutions
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ISARIC-4C / WP5 Data Integration
MIT LicenseData integration pipeline for cleaning RNA-Seq data, GWAS, virology, etc. and inserting into SQL
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Data-driven chemistry / data driven chemistry 23-24
Creative Commons Attribution 4.0 InternationalUpdated -
Student version of data-driven chemistry for AY 2022-23
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Nextflow pipeline for cell-level variant calling in 10x single-cell RNA-sequencing data.
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