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Software to de-identify free text reports for DataLoch

Temporary Test Project

To run TensorFlow on a single machine, and will train a simple classifier to classify images of flowers.

Codes to simulate condensins and loop extruders that can grab polymer segments in 3D. Developed by Andrea Bonato

Codes to simulate recoloring of a polymer based on competing epigenetic marks.

This week we will consider the design of some classic algorithms for the first hour and then get started on a mini-project modelling ash fallout from the atmosphere as a particle problem. The write-up of this practical will be a formative assessment.

Worked solutions for the class exercises from Session 4.

OCMW - Open Coastal Modelling Workflow

Flask-based authentication layer behind Nginx, fo use with R Shiny Server apps

A solution to the ash fallout practical

OpenGeoSys THM/C simulator version 5 - version in use at University of Edinburgh, recording changes by Chris McDermott 2018-24

Contains ruffus pipelines for running the entire single-end or paired-end CRAC pipelines.

Underlying code for manuscript "Spatio-temporal characteristics of the SARS-CoV-2 Omicron variant spread at fine geographical scales, and comparison to earlier variants"

Pan-cancer analysis of deletion mutation patterns relative to genic transcription.

Custom scripts used for Masalmeh et al 2019