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s1554563 / nextflow_rnaseq
MIT LicenseRNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
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s1554563 / rnaseq
MIT LicenseRNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
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Genome wide analysis of emRiboSeq embedded ribonucleotide context preferences.
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Pan-cancer analysis of deletion mutation patterns relative to genic transcription.
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uoe-packaging-debs / libdbd-oracle-perl
Artistic License 1.0Updated -
Tariq elahi / COGS
MIT LicenseThe code repo for the Changing of the Guards empirical framework for investigating Tor path selection.
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Scripts for analysis of sequencing data for Irene Kallimasioti Pazi's PhD thesis.
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Analysis of poly-A selected RNA sequencing from human whole blood samples of COVID-19 patients.
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taylor-lab / lce-ls
MIT LicenseAnalysis code and pipelines from the Liver Cancer Evolution (LCE) consortium Lesion Segregation (LS) project.
Topics: Lesion Segre...Updated -
Stage and process BAMs using Canvas (https://github.com/Illumina/canvas)
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chnfsv4acl is a tool for creating and applying GPFS NFSv4 ACLs to files and directories, either individually or recursively.
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Alhafidz Hamdan / fame_gbm
MIT LicenseUpdated -
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taylor-lab / lceStrandInteractions
MIT LicenseA record of the code and analysis reported in Anderson et al, 2024 to investigate the strand specificity of DNA damage, repair and its subsequent mutagenicity. This code is not intended as a generalisable and portable software package, rather serves to allow for reproduction of the reported analyses. Code within the repository could be adapted for more generalised analysis and has been licensed to allow this.
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