Explore projects
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Code for the analyses presented in: "Characterisation of the neonatal brain using myelin-sensitive magnetisation transfer imaging"
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Data and code used to infer RSV specific burden of disease in 2021-2 bronchiolitis season
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Supporting data for study examining iGAS empyema cases in children and young people in Scotland.
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Underlying code for manuscript "Intervals between COVID-19 testing, and more severe outcomes".
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Graeme Grimes / Quantitative Nucleosome Analysis
CeCILL Free Software License Agreement v2.1Updated -
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Underlying code for manuscript "Predicting future spatial patterns in COVID-19 booster vaccine uptake."
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Underlying code for manuscript "Spatio-temporal characteristics of the SARS-CoV-2 Omicron variant spread at fine geographical scales, and comparison to earlier variants"
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Nextflow pipeline for retrieving sequencing depths of samples mitochondrial genomes.
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Mitochondrial variant caller benchmarking for low coverage single-cell RNA-Seq data.
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Bayesian ETAS implementation using Inlabru for the next time-dependent models RISE forecasting experiment for Italy
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Nextflow pipeline for cell-level variant calling in 10x single-cell RNA-sequencing data.
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s1554563 / nextflow_rnaseq
MIT LicenseRNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
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s1554563 / rnaseq
MIT LicenseRNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
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