Explore projects
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Underlying code for manuscript "Intervals between COVID-19 testing, and more severe outcomes".
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Graeme Grimes / Quantitative Nucleosome Analysis
CeCILL Free Software License Agreement v2.1Updated -
Underlying code for manuscript "Predicting future spatial patterns in COVID-19 booster vaccine uptake."
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R package for creation and manipulation of vocalisation diagrams and speech interaction.
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University of Edinburgh contributions to the quantification of variables in the UK SSP project.
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Code using dirichlet-multinomial distribution as a null model for assessing significance of cosine similarities of mutation spectra of differing dimensions
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NUMT removal and variant caller benchmarking for low mtDNA heteroplasmies.
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Bayesian ETAS implementation using Inlabru for the next time-dependent models RISE forecasting experiment for Italy
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Mitochondrial variant caller benchmarking for low coverage single-cell RNA-Seq data.
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Nextflow pipeline for cell-level variant calling in 10x single-cell RNA-sequencing data.
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Genome wide analysis of emRiboSeq embedded ribonucleotide context preferences.
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Pan-cancer analysis of deletion mutation patterns relative to genic transcription.
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s1554563 / nextflow_rnaseq
MIT LicenseRNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
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s1554563 / rnaseq
MIT LicenseRNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
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