Explore projects
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End-to-end automated processing of live-cell imaging data. Fork (via mirror at https://git.ecdf.ed.ac.uk/swain-lab/aliby/aliby-mirror) of https://gitlab.com/aliby/aliby.
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All the code needed to run the notebooks in the pyRBDome pipelines
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TauSpeech is a Python module for analyzing and generating speech articulatory trajectories using general Tau theory.
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A script to scrape river level observations from the Department of Hydrology and Metreology's website.
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PlanArt is a modular software for testing and comparing computational models of human speech articulation planning.
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Code for identifying amino acid residues that interact with RNA- and/or DNA in pdb files of ribonucleoprotein complexes.
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A record of the code and analysis reported in Anderson et al, 2024 to investigate the strand specificity of DNA damage, repair and its subsequent mutagenicity. This code is not intended as a generalisable and portable software package, rather serves to allow for reproduction of the reported analyses. Code within the repository could be adapted for more generalised analysis and has been licensed to allow this.
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Machine learning software and library for inter-atomic potentials development
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Scripts and template configuration files for the trio whole exome sequencing analysis done under contract to the NHS Scotland Clinical Genetics Services.
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Code to reproduce the analyses based on the Vogt-Bailey Index (VBI) applied to neonatal cortical data.
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