Explore projects
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Surveillance study examining invasive group A streptococcus cases in the 2022/23 season
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Supporting data for study examining iGAS empyema cases in children and young people in Scotland.
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Underlying code for manuscript "Intervals between COVID-19 testing, and more severe outcomes".
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Underlying code for manuscript "Predicting future spatial patterns in COVID-19 booster vaccine uptake."
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Underlying code for manuscript "Spatio-temporal characteristics of the SARS-CoV-2 Omicron variant spread at fine geographical scales, and comparison to earlier variants"
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Nextflow pipeline for retrieving sequencing depths of samples mitochondrial genomes.
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Mitochondrial variant caller benchmarking for low coverage single-cell RNA-Seq data.
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Bayesian ETAS implementation using Inlabru for the next time-dependent models RISE forecasting experiment for Italy
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Nextflow pipeline for cell-level variant calling in 10x single-cell RNA-sequencing data.
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RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
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RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
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Genome wide analysis of emRiboSeq embedded ribonucleotide context preferences.
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Pan-cancer analysis of deletion mutation patterns relative to genic transcription.
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