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A record of the code and analysis reported in Anderson et al, 2024 to investigate the strand specificity of DNA damage, repair and its subsequent mutagenicity. This code is not intended as a generalisable and portable software package, rather serves to allow for reproduction of the reported analyses. Code within the repository could be adapted for more generalised analysis and has been licensed to allow this.
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Scripts and template configuration files for the trio whole exome sequencing analysis done under contract to the NHS Scotland Clinical Genetics Services.
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Code to reproduce the analyses based on the Vogt-Bailey Index (VBI) applied to neonatal cortical data.
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Data integration pipeline for cleaning RNA-Seq data, GWAS, virology, etc. and inserting into SQL
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###Source data for analysis of explanatory variables associated with neonatal intramuscular vitamin K administration in Scotland###
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