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Adding default xml dir. Making batching size-based rather than number-based....
Adding default xml dir. Making batching size-based rather than number-based. Adding submit action. Making order of runs.csv deterministic, removing 'sample_' prefix. Fixing experiment and dataset creation. Adding non-empty test data. Updating Conda environment.
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- environment.yml 9 additions, 8 deletionsenvironment.yml
- metadata/ega_metadata.py 103 additions, 25 deletionsmetadata/ega_metadata.py
- metadata/templates/dataset.xml 1 addition, 1 deletionmetadata/templates/dataset.xml
- metadata/templates/experiment.xml 1 addition, 1 deletionmetadata/templates/experiment.xml
- metadata/tests/samples.csv 11 additions, 9 deletionsmetadata/tests/samples.csv
- metadata/tests/test_ega_metadata.py 1 addition, 1 deletionmetadata/tests/test_ega_metadata.py
- modules/local/ega/collectruncsvs.nf 1 addition, 1 deletionmodules/local/ega/collectruncsvs.nf
- modules/local/ega/encrypt/main.nf 2 additions, 2 deletionsmodules/local/ega/encrypt/main.nf
- tests/assets/sample10_R1.fastq.gz 0 additions, 0 deletionstests/assets/sample10_R1.fastq.gz
- tests/assets/sample10_R2.fastq.gz 0 additions, 0 deletionstests/assets/sample10_R2.fastq.gz
- tests/assets/sample1_R1.fastq.gz 0 additions, 0 deletionstests/assets/sample1_R1.fastq.gz
- tests/assets/sample1_R2.fastq.gz 0 additions, 0 deletionstests/assets/sample1_R2.fastq.gz
- tests/assets/sample2_R1.fastq.gz 0 additions, 0 deletionstests/assets/sample2_R1.fastq.gz
- tests/assets/sample2_R2.fastq.gz 0 additions, 0 deletionstests/assets/sample2_R2.fastq.gz
- tests/assets/sample3_R1.fastq.gz 0 additions, 0 deletionstests/assets/sample3_R1.fastq.gz
- tests/assets/sample3_R2.fastq.gz 0 additions, 0 deletionstests/assets/sample3_R2.fastq.gz
- tests/assets/sample4_R1.fastq.gz 0 additions, 0 deletionstests/assets/sample4_R1.fastq.gz
- tests/assets/sample4_R2.fastq.gz 0 additions, 0 deletionstests/assets/sample4_R2.fastq.gz
- tests/assets/sample5_R1.fastq.gz 0 additions, 0 deletionstests/assets/sample5_R1.fastq.gz
- tests/assets/sample5_R2.fastq.gz 0 additions, 0 deletionstests/assets/sample5_R2.fastq.gz
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