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Created with Raphaël 2.2.018Mar19Feb15Jan14131030Oct252327Sep2Aug15Apr13Adding --policy_accession to createdataset (falls back on --policy_receipt). Fixing metadata/tests/samples.csvmastermasterDoc updates, putting conda in the default profileFixing sample IDs in experiment creationMaking sample aliases uniqueAdding Pyega3. Making study abstract a direct config entry rather than a separate file, fixing experiment titles and sample annotations. Fixing tests.Adding default xml dir. Making batching size-based rather than number-based. Adding submit action. Making order of runs.csv deterministic, removing 'sample_' prefix. Fixing experiment and dataset creation. Adding non-empty test data. Updating Conda environment.Fixing study.xml when no study attributes are specified. Fixing --force, adding --center_name to study/submission xmlsAdding metadata documentationMerge branch 'metadata' into 'master'Merge branch 'dsl2' into 'master'Initial commit of metadata submission scriptmetadatametadataAdding conda directove to encryption step. Defaulting publish mode to symlink - makes sense for large uploads, and FTP/Aspera can deal with symlinks anywaydsl2dsl2Porting to dsl2. Using egapass file instead of --ega_password, moving ega-cryptor JAR to moduleDir - removes need to specify --ega_cryptorPulling in changes from newer GitHub repoUses samples.csv to map sample ids to internal EGA sample aliases for output run CSV fileCommand line example and detailsAspera upload process & relevant parameters, conda envEncrypts read files in pairs and collects run md5s into CSV file for EGA Submitter PortalInitial commit based on stripped down version of nf-core templateInitial commit