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Commit 0f7e4ab8 authored by ameyner2's avatar ameyner2
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Run notes for batch 19573

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1 merge request!3Ultra 2 SOP/doc updates
# 19573 EdGe
## Issues
* 447226 - sample 131873 (father) is very low depth (6X), comes up as non-paternity for 114891 as a result but this can be ignored
* 453955 - sample 132058 (proband) comes up as incorrect sex (annotated as female in PED file but no evidence of Y coverage)
## Notes
* no contamination issues
* low depth but still usable samples
* 438938 - sample 131858 (proband) 33X
* 433285 - sample 132221 (proband) 36X
* XYY observable in X/Y coverage
* 452542 - sample 131311 (proband)
* 438235 - sample 131376 (father)
* Possible amplification of a region on chr4 - increased coverage observed in QC
* 438371 samples 131201 (proband), 131202 (mother)
* 454213 samples 132222 (proband), 132223 (father)
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