Fixed qsub commas

docs/SOP_archiving.md

@@ -44,9 +44,7 @@ cd /home/u035/project/trio_whole_exome/analysis/logs
 
 ```
 qsub -v \
-  PROJECT_ID=$project_id,\
-  VERSION=$version,\
-  CONFIG_SH=/home/u035/project/scripts/trio_whole_exome_config.sh \
+  PROJECT_ID=$project_id,VERSION=$version,CONFIG_SH=/home/u035/project/scripts/trio_whole_exome_config.sh \
   -N trio_whole_exome_cram_compression.$project_id -J 1-${X} \
   /home/u035/project/scripts/submit_trio_wes_cram_compression.sh
 ```
@@ -55,9 +53,7 @@ qsub -v \
 
 ```
 qsub -v \
-  PROJECT_ID=$project_id,\
-  VERSION=$version,\
-  CONFIG_SH=/home/u035/project/scripts/trio_whole_exome_config.sh \
+  PROJECT_ID=$project_id,VERSION=$version,CONFIG_SH=/home/u035/project/scripts/trio_whole_exome_config.sh \
   -N trio_whole_exome_checksums.$project_id -J 1-${X} \
   /home/u035/project/scripts/submit_trio_wes_checksums.sh
 cd ../output
@@ -69,10 +65,7 @@ wc -l *$project_id*/md5sum.txt
 ```
 priority_dirs=ddmmyyyy #:ddmmyyyy
 qsub -v \
-  PROJECT_ID=$project_id,\
-  VERSION=$version,\
-  PRIORITY_DIRS=$priority_dirs,\
-  CONFIG_SH=/home/u035/project/scripts/trio_whole_exome_config.sh \
+  PROJECT_ID=$project_id,VERSION=$version,PRIORITY_DIRS=$priority_dirs,CONFIG_SH=/home/u035/project/scripts/trio_whole_exome_config.sh \
   -N trio_whole_exome_priority_and_qc_checksums.$project_id \
   /home/u035/project/scripts/submit_trio_wes_priority_and_qc_checksums.sh
 ```
@@ -81,10 +74,7 @@ qsub -v \
 
 ```
 qsub -v \
-  PROJECT_ID=$project_id,\
-  VERSION=$version,\
-  PRIORITY_DIRS=$priority_dirs, \
-  CONFIG_SH=/home/u035/project/scripts/trio_whole_exome_config.sh \
+  PROJECT_ID=$project_id,VERSION=$version,PRIORITY_DIRS=$priority_dirs,CONFIG_SH=/home/u035/project/scripts/trio_whole_exome_config.sh \
   -N trio_whole_exome_archive_project.$project_id \
   /home/u035/project/scripts/submit_trio_wes_archive_project.sh
 grep -c FAIL trio_whole_exome_archive_project.$project_id*