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Commit 207fb5d3 authored by ameyner2's avatar ameyner2
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Updated to use TWIST targets plus 15bp padding

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trio_whole_exome_config.sh
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...@@ -5,7 +5,7 @@ ...@@ -5,7 +5,7 @@
SCRIPTS=/home/u027/project/scripts SCRIPTS=/home/u027/project/scripts
BCBIO_TEMPLATE=$SCRIPTS/trio_whole_exome_bcbio_template.yaml BCBIO_TEMPLATE=$SCRIPTS/trio_whole_exome_bcbio_template.yaml
TARGET=/home/u027/project/resources/Twist_Exome_Target_hg38.bed TARGET=/home/u027/project/resources/Twist_Exome_Target_hg38.plus15bp.bed
DOWNLOAD_DIR=/scratch/u027/project/trio_whole_exome/data DOWNLOAD_DIR=/scratch/u027/project/trio_whole_exome/data
REFERENCE_GENOME=/home/u027/project/software/bcbio/genomes/Hsapiens/hg38/seq/hg38.fa REFERENCE_GENOME=/home/u027/project/software/bcbio/genomes/Hsapiens/hg38/seq/hg38.fa
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