Fixed formatting

docs/run-notes/19373_run_notes.md

@@ -6,10 +6,13 @@ Urgent sequencing run on NextSeq 2000 from CRF
 
 ## Set up
 
+```
 git reset --hard 06a48fb115f1a446a2b855cfa96d3b59bedf06bf
+```
 
 Changed father for 20211005_Ansari_Morad_19373_438214 to unaffected in params family PED file
 
+```
 export SOURCE_DIR=/scratch/u035/project/trio_whole_exome/analysis/output
 export BATCH_ID=20211005_Ansari_Morad
 export BATCH_NUM=20211005
@@ -18,11 +21,13 @@ export VERSION_N=v1
 export PROJECT_ID=20211006_19373
 export SOURCE_DIR=${SOURCE_DIR}/${VERSION_N}_${BATCH_NUM}
 /home/u035/project/scripts/NHS_WES_trio_setup.sh &> v1_20211005_Ansari_Morad.NHS_WES_trio_setup.log
+```
 
 DECIPHER_INTERNAL_IDs.txt created manually from Excel sheet from Morad
 
 ## Trio prioritization
 
+```
 SOURCE_DIR=/scratch/u035/project/trio_whole_exome/analysis/output
 BATCH_ID=20211005_Ansari_Morad
 BATCH_NUM=20211005
@@ -31,6 +36,7 @@ VERSION_N=v1
 PROJECT_ID=20211006_19373
 
 qsub -v SOURCE_DIR=${SOURCE_DIR}/${VERSION_N}_${BATCH_NUM},BATCH_ID=${BATCH_ID},PLATE_ID=${PLATE_ID},PROJECT_ID=${PROJECT_ID},VERSION_N=${VERSION_N} -J 1-4 /home/u035/project/scripts/process_NHS_WES_trio.sh
+```
 
 ## IGV snapshots