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Commit 489c77f8 authored by ameyner2's avatar ameyner2
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Merge branch 'master' of git.ecdf.ed.ac.uk:igmmbioinformatics/trio-whole-exome

parents dbb4a10f 0daaf36c
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docs/SOP_archiving.md
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...@@ -44,7 +44,8 @@ cd /home/u035/project/trio_whole_exome/analysis/logs ...@@ -44,7 +44,8 @@ cd /home/u035/project/trio_whole_exome/analysis/logs
``` ```
qsub -v \ qsub -v \
PROJECT_ID=$project_id, \ PROJECT_ID=$project_id,\
VERSION=$version,\
CONFIG_SH=/home/u035/project/scripts/trio_whole_exome_config.sh \ CONFIG_SH=/home/u035/project/scripts/trio_whole_exome_config.sh \
-N trio_whole_exome_cram_compression.$project_id -J 1-${X} \ -N trio_whole_exome_cram_compression.$project_id -J 1-${X} \
/home/u035/project/scripts/submit_trio_wes_cram_compression.sh /home/u035/project/scripts/submit_trio_wes_cram_compression.sh
...@@ -54,7 +55,8 @@ qsub -v \ ...@@ -54,7 +55,8 @@ qsub -v \
``` ```
qsub -v \ qsub -v \
PROJECT_ID=$project_id, \ PROJECT_ID=$project_id,\
VERSION=$version,\
CONFIG_SH=/home/u035/project/scripts/trio_whole_exome_config.sh \ CONFIG_SH=/home/u035/project/scripts/trio_whole_exome_config.sh \
-N trio_whole_exome_checksums.$project_id -J 1-${X} \ -N trio_whole_exome_checksums.$project_id -J 1-${X} \
/home/u035/project/scripts/submit_trio_wes_checksums.sh /home/u035/project/scripts/submit_trio_wes_checksums.sh
......
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