Changed log directory to scratch.

docs/SOP_sample_transfer_from_EdGe_to_EPCC.md

@@ -22,7 +22,7 @@ This script will be referred to as <user_transfer_info_file>.
 
 ## Software requirements
 
-The Aspera command line interface software (version 3.7.4.147727) is installed in the project area at /home/u035/project/software/aspera/connect/bin. Md5 checksums are calculated by the system function md5sum. GNU Parallels is installed at /home/u035/project/software/bin.
+The Aspera command line interface software (version 3.7.4.147727) is installed in the project area at /home/u035/project/software/aspera/connect/bin. Md5 checksums are calculated by the system function md5sum.
 
 ## Notes
 
@@ -49,7 +49,7 @@ a.	The script is set to request 24 hours of wall time. The transfer speed is rou
 b.	If a download does not complete, this step may be run again and the download will resume from where it left off. If there are any files with extension .partial in the target directory, the download did not complete.
 
 ```
-cd /home/u035/project/trio_whole_exome/logs
+cd /scratch/u035/project/trio_whole_exome/logs
 project_id=<EdGE_project_id>
 transfer_sh=<full_path_to_user_transfer_info_file>
 qsub -v TRANSFER_INFO_FILE=$transfer_sh,PROJECT=$project_id \
@@ -68,7 +68,7 @@ If any files in a download do not have the correct md5 checksum, manually delete
 5. Clean up the logs directory.
 
 ```
-cd /home/u035/project/trio_whole_exome/logs
+cd /scratch/u035/project/trio_whole_exome/logs
 mv aspera.$project_id.* complete/
 mv project/$project_id.log complete/
 ```