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Commit 52ad2ec1 authored by ameyner2's avatar ameyner2
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Added date for bcbio dev branch, VASE installation instructions.

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...@@ -6,7 +6,7 @@ Downloaded Aspera Connect version 3.7.4.147727 from https://downloads.asperasoft ...@@ -6,7 +6,7 @@ Downloaded Aspera Connect version 3.7.4.147727 from https://downloads.asperasoft
## bcbio ## bcbio
Version 1.2.3 with some bugfixes from the dev branch. Version 1.2.3 with some bugfixes from the dev branch as of 26 August 2020.
Start with installing the base software, and add datatargets. Start with installing the base software, and add datatargets.
...@@ -50,4 +50,17 @@ Increase JVM memory for GATK in galaxy/bcbio_system.yaml ...@@ -50,4 +50,17 @@ Increase JVM memory for GATK in galaxy/bcbio_system.yaml
## VASE ## VASE
VASE was installed following the instructions at https://github.com/david-a-parry/vase. VASE was installed following the instructions at https://github.com/david-a-parry/vase, downloaded 27 August 2020.
```
cd /home/u035/project/software/install
git clone https://github.com/david-a-parry/vase.git
cd vase
/home/u035/project/software/bcbio/anaconda/bin/python3 setup.py install --prefix /home/u035/project/software
```
Users should include this line in any shell scripts calling VASE:
```
export PYTHONPATH=/home/u035/project/software/lib/python3.6/site-packages
```
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