Added Mike scripts for redoing setup
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- bin/compute_DDG2P_coverage_illumina_exome_bam.sh 4 additions, 3 deletionsbin/compute_DDG2P_coverage_illumina_exome_bam.sh
- bin/compute_DDG2P_default_mosdepth_coverage.sh 67 additions, 0 deletionsbin/compute_DDG2P_default_mosdepth_coverage.sh
- bin/compute_full_coverage_illumina_exome_bam.sh 66 additions, 0 deletionsbin/compute_full_coverage_illumina_exome_bam.sh
- bin/compute_mosdepth_with_overlap_coverage_bam.sh 44 additions, 0 deletionsbin/compute_mosdepth_with_overlap_coverage_bam.sh
- bin/convert_DEC_to_v10.py 7 additions, 5 deletionsbin/convert_DEC_to_v10.py
- bin/count_decipher_entries.py 36 additions, 0 deletionsbin/count_decipher_entries.py
- bin/extract_solo_FAM_PRO_ID.py 80 additions, 51 deletionsbin/extract_solo_FAM_PRO_ID.py
- bin/extract_trio_FAM_PRO_ID.py 67 additions, 39 deletionsbin/extract_trio_FAM_PRO_ID.py
- bin/filter_LQ_GT.py 2 additions, 3 deletionsbin/filter_LQ_GT.py
- bin/generate_DEC_IGV_scripts.py 17 additions, 5 deletionsbin/generate_DEC_IGV_scripts.py
- bin/merge_and_rename_NGI_fastq_files.py 35 additions, 0 deletionsbin/merge_and_rename_NGI_fastq_files.py
- bin/old_convert_DEC_to_v10.py 78 additions, 0 deletionsbin/old_convert_DEC_to_v10.py
- bin/peddy_validation.pl 11 additions, 3 deletionsbin/peddy_validation.pl
- bin/qc_metrics.R 3 additions, 2 deletionsbin/qc_metrics.R
- bin/redo_extract_quad_FAM_PRO_ID.py 0 additions, 0 deletionsbin/redo_extract_quad_FAM_PRO_ID.py
- bin/redo_extract_shared_FAM_PRO_ID.py 0 additions, 0 deletionsbin/redo_extract_shared_FAM_PRO_ID.py
- bin/redo_extract_solo_FAM_PRO_ID.py 153 additions, 0 deletionsbin/redo_extract_solo_FAM_PRO_ID.py
- bin/redo_extract_trio_FAM_PRO_ID.py 134 additions, 0 deletionsbin/redo_extract_trio_FAM_PRO_ID.py
- bin/redo_generate_DEC_IGV_trio_scripts.py 4 additions, 4 deletionsbin/redo_generate_DEC_IGV_trio_scripts.py
- bin/redo_hunt_novel_shared_vars.py 5 additions, 3 deletionsbin/redo_hunt_novel_shared_vars.py
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