.gitignore

G2P.pm

README.md

add_family_id_to_santosh_ped.pl

add_samples_from_previous_CRF_runs.sh

add_samples_from_previous_EdGe_runs.sh

check_quad_PED.py

check_shared_PED.py

convert_DEC_to_v10.py

delete_BAM.sh

docs/Resources.md

docs/SOP_alignment_variant_annotation.md

docs/SOP_archiving.md

docs/Software_installation.md

docs/run-notes/19258_run_notes.md

docs/run-notes/19502_run_notes.md

docs/run-notes/19573_run_notes.md

.../plots/runs_by_sequencer_fisher_strand_test_histogram.png

...uencer_fisher_strand_test_vs_strand_odds_ratio_xyplot.png

...s/plots/runs_by_sequencer_strand_odds_ratio_histogram.png