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Commit 7abf48a4 authored by not populated not populated's avatar not populated not populated
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Slurm scheduler can handle single index job array submission

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1 merge request!3Ultra 2 SOP/doc updates
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submit_bcbio_trio_wes.sh
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...@@ -6,17 +6,6 @@ ...@@ -6,17 +6,6 @@
#SBATCH --output=trio_whole_exome_bcbio.%A_%a.out #SBATCH --output=trio_whole_exome_bcbio.%A_%a.out
#SBATCH --error=trio_whole_exome_bcbio.%A_%a.err #SBATCH --error=trio_whole_exome_bcbio.%A_%a.err
# enable running singletons
if [ -z $SLURM_ARRAY_TASK_ID ]
then
if [ -z $INDEX ]
then
export SLURM_ARRAY_TASK_ID=1
else
export SLURM_ARRAY_TASK_ID=$INDEX
fi
fi
# Expects environment variables to be set # Expects environment variables to be set
# PROJECT_ID - e.g. 12345_LastnameFirstname # PROJECT_ID - e.g. 12345_LastnameFirstname
# CONFIG_SH - absolute path to configuration script setting environment variables # CONFIG_SH - absolute path to configuration script setting environment variables
......
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