Added CRF configuration file

trio_whole_exome_crf_config.sh

+#!/usr/bin/bash
+#
+# Basic configuration options for trio WES pipeline
+#
+
+SCRIPTS=/home/u035/project/scripts
+BCBIO_TEMPLATE=$SCRIPTS/trio_whole_exome_bcbio_crf_template.yaml
+TARGET=/home/u035/project/resources/Twist_Exome_RefSeq_targets_hg38.plus15bp.bed
+DOWNLOAD_DIR=/scratch/u035/project/trio_whole_exome/data
+REFERENCE_GENOME=/home/u035/project/software/bcbio/genomes/Hsapiens/hg38/seq/hg38.fa
+
+BASE=/scratch/u035/project/trio_whole_exome/analysis
+PARAMS_DIR=$BASE/params
+READS_DIR=$BASE/reads
+CONFIG_DIR=$BASE/config
+WORK_DIR=$BASE/work
+OUTPUT_DIR=$BASE/output
+
+ARCHIVE_DIR=/archive/u035/trio_whole_exome
+
+export PATH=/home/u035/project/software/bcbio/tools/bin:$PATH