Passing files into read_inputs instead of values, adding BCBio Yaml writing and execution (839b6154) · Commits · igmmbioinformatics / trio-whole-exome · GitLab

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839b6154

Commit 839b6154 authored 3 years ago by mwham

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Passing files into read_inputs instead of values, adding BCBio Yaml writing and execution

parent 64e14f18

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Pipeline #10017 failed 3 years ago

Stage: test

Changes 7
Pipelines 1

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pipeline/inputs.nf 3 additions, 3 deletions

pipeline/inputs.nf
pipeline/main.nf 34 additions, 5 deletions

pipeline/main.nf
pipeline/validation.nf 1 addition, 1 deletion

pipeline/validation.nf
tests/assets/bcbio/bcbio_template.yaml 22 additions, 0 deletions

tests/assets/bcbio/bcbio_template.yaml
tests/run_tests.sh 5 additions, 2 deletions

tests/run_tests.sh
tests/scripts/bcbio_nextgen.py 17 additions, 0 deletions

tests/scripts/bcbio_nextgen.py
tests/scripts/bcbio_prepare_samples.py 19 additions, 0 deletions

tests/scripts/bcbio_prepare_samples.py

with 101 additions and 11 deletions

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