Passing files into read_inputs instead of values, adding BCBio Yaml writing and execution
Showing
- pipeline/inputs.nf 3 additions, 3 deletionspipeline/inputs.nf
- pipeline/main.nf 34 additions, 5 deletionspipeline/main.nf
- pipeline/validation.nf 1 addition, 1 deletionpipeline/validation.nf
- tests/assets/bcbio/bcbio_template.yaml 22 additions, 0 deletionstests/assets/bcbio/bcbio_template.yaml
- tests/run_tests.sh 5 additions, 2 deletionstests/run_tests.sh
- tests/scripts/bcbio_nextgen.py 17 additions, 0 deletionstests/scripts/bcbio_nextgen.py
- tests/scripts/bcbio_prepare_samples.py 19 additions, 0 deletionstests/scripts/bcbio_prepare_samples.py
tests/assets/bcbio/bcbio_template.yaml
0 → 100644
tests/scripts/bcbio_prepare_samples.py
0 → 100755
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