Fixed position of defining SHORT_PROJECT_ID variable

bin/trio_wes_prepare_variant_calling_bcbio_config.sh

@@ -24,13 +24,14 @@ NEW_VERSION=$4
 
 source $CONFIG_SH
 
+SHORT_PROJECT_ID=`echo $PROJECT_ID | cut -f 1 -d '_'`
+
 mkdir -p ${OUTPUT_DIR}/${SHORT_PROJECT_ID}_${NEW_VERSION}/params
 mkdir -p ${OUTPUT_DIR}/${SHORT_PROJECT_ID}_${NEW_VERSION}/config
 mkdir -p ${OUTPUT_DIR}/${SHORT_PROJECT_ID}_${NEW_VERSION}/families
 
 # Copy the PED files
 cd $PARAMS_DIR
-SHORT_PROJECT_ID=`echo $PROJECT_ID | cut -f 1 -d '_'`
 cp $OUTPUT_DIR/${SHORT_PROJECT_ID}_${OLD_VERSION}/params/*.ped ./
 cp $OUTPUT_DIR/${SHORT_PROJECT_ID}_${OLD_VERSION}/params/*.txt ./