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Commit a4e522c7 authored by ameyner2's avatar ameyner2
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Fixed typo in grep for md5 check

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...@@ -60,7 +60,7 @@ qsub -v TRANSFER_INFO_FILE=$transfer_sh,PROJECT=$project_id \ ...@@ -60,7 +60,7 @@ qsub -v TRANSFER_INFO_FILE=$transfer_sh,PROJECT=$project_id \
4. Confirm checksums via md5. The output file will have one line per file with an md5 checksum and should have the text ‘OK’ at the end of the line. A line not ending in ‘OK’ indicates that the transfer of this file has failed. 4. Confirm checksums via md5. The output file will have one line per file with an md5 checksum and should have the text ‘OK’ at the end of the line. A line not ending in ‘OK’ indicates that the transfer of this file has failed.
``` ```
grep -v 'OK$' -c \ /scratch/u035/project/trio_whole_exome/data/$project_id/md5_check.txt grep -v 'OK$' /scratch/u035/project/trio_whole_exome/data/$project_id/md5_check.txt
``` ```
If any files in a download do not have the correct md5 checksum, manually delete the affected files and return to step 3, which will re-download the missing files and re-run the md5 checking. When all md5 checksums are correct, enter today’s date in the ‘Downloaded’ field for the project. If any files in a download do not have the correct md5 checksum, manually delete the affected files and return to step 3, which will re-download the missing files and re-run the md5 checking. When all md5 checksums are correct, enter today’s date in the ‘Downloaded’ field for the project.
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