Making min/max resources configurable, adding test stubs (acd6068e) · Commits · igmmbioinformatics / trio-whole-exome

Commit acd6068e authored 2 years ago by mwham

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Making min/max resources configurable, adding test stubs

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.gitlab-ci.yml 2 additions, 2 deletions

.gitlab-ci.yml
main.nf 0 additions, 1 deletion

main.nf
nextflow.config 88 additions, 15 deletions

nextflow.config
pipeline/var_calling.nf 106 additions, 5 deletions

pipeline/var_calling.nf
tests/assets/input_data/edinburgh_genomics/X12345_A_Researcher/20210922/12345_000001_000001_WESTwist_IDT-B/200922_A00001_0001_BHNTGMDMXX_1_00001AM0001L01_1.fastq.gz 0 additions, 0 deletions

...200922_A00001_0001_BHNTGMDMXX_1_00001AM0001L01_1.fastq.gz
tests/assets/input_data/edinburgh_genomics/X12345_A_Researcher/20210922/12345_000001_000001_WESTwist_IDT-B/200922_A00001_0001_BHNTGMDMXX_1_00001AM0001L01_2.fastq.gz 0 additions, 0 deletions

...200922_A00001_0001_BHNTGMDMXX_1_00001AM0001L01_2.fastq.gz
tests/assets/input_data/edinburgh_genomics/X12345_A_Researcher/20210922/12345_000001_000001_WESTwist_IDT-B/200922_A00001_0001_BHNTGMDMXX_2_00001AM0001L01_1.fastq.gz 0 additions, 0 deletions

...200922_A00001_0001_BHNTGMDMXX_2_00001AM0001L01_1.fastq.gz
tests/assets/input_data/edinburgh_genomics/X12345_A_Researcher/20210922/12345_000001_000001_WESTwist_IDT-B/200922_A00001_0001_BHNTGMDMXX_2_00001AM0001L01_2.fastq.gz 0 additions, 0 deletions

...200922_A00001_0001_BHNTGMDMXX_2_00001AM0001L01_2.fastq.gz
tests/assets/input_data/edinburgh_genomics/X12345_A_Researcher/20210922/12345_000002_000001_WESTwist_IDT-B/200922_A00001_0001_BHNTGMDMXX_3_00002AM0001L01_1.fastq.gz 0 additions, 0 deletions

...200922_A00001_0001_BHNTGMDMXX_3_00002AM0001L01_1.fastq.gz
tests/assets/input_data/edinburgh_genomics/X12345_A_Researcher/20210922/12345_000002_000001_WESTwist_IDT-B/200922_A00001_0001_BHNTGMDMXX_3_00002AM0001L01_2.fastq.gz 0 additions, 0 deletions

...200922_A00001_0001_BHNTGMDMXX_3_00002AM0001L01_2.fastq.gz
tests/assets/input_data/edinburgh_genomics/X12345_A_Researcher/20210922/12345_000002_000001_WESTwist_IDT-B/200922_A00001_0001_BHNTGMDMXX_4_00002AM0001L01_1.fastq.gz 0 additions, 0 deletions

...200922_A00001_0001_BHNTGMDMXX_4_00002AM0001L01_1.fastq.gz
tests/assets/input_data/edinburgh_genomics/X12345_A_Researcher/20210922/12345_000002_000001_WESTwist_IDT-B/200922_A00001_0001_BHNTGMDMXX_4_00002AM0001L01_2.fastq.gz 0 additions, 0 deletions

...200922_A00001_0001_BHNTGMDMXX_4_00002AM0001L01_2.fastq.gz
tests/assets/input_data/edinburgh_genomics/X12345_A_Researcher/20210922/12345_000003_000001_WESTwist_IDT-B/200922_A00001_0001_BHNTGMDMXX_5_00003AM0001L01_1.fastq.gz 0 additions, 0 deletions

...200922_A00001_0001_BHNTGMDMXX_5_00003AM0001L01_1.fastq.gz
tests/assets/input_data/edinburgh_genomics/X12345_A_Researcher/20210922/12345_000003_000001_WESTwist_IDT-B/200922_A00001_0001_BHNTGMDMXX_5_00003AM0001L01_2.fastq.gz 0 additions, 0 deletions

...200922_A00001_0001_BHNTGMDMXX_5_00003AM0001L01_2.fastq.gz
tests/assets/input_data/edinburgh_genomics/X12345_A_Researcher/20210922/12345_000003_000001_WESTwist_IDT-B/200922_A00001_0001_BHNTGMDMXX_6_00003AM0001L01_1.fastq.gz 0 additions, 0 deletions

...200922_A00001_0001_BHNTGMDMXX_6_00003AM0001L01_1.fastq.gz
tests/assets/input_data/edinburgh_genomics/X12345_A_Researcher/20210922/12345_000003_000001_WESTwist_IDT-B/200922_A00001_0001_BHNTGMDMXX_6_00003AM0001L01_2.fastq.gz 0 additions, 0 deletions

...200922_A00001_0001_BHNTGMDMXX_6_00003AM0001L01_2.fastq.gz
tests/assets/input_data/edinburgh_genomics/X12345_A_Researcher/20210922/12345_000004_000002_WESTwist_IDT-B/200922_A00001_0001_BHNTGMDMXX_7_00004AM0001L01_1.fastq.gz 0 additions, 0 deletions

...200922_A00001_0001_BHNTGMDMXX_7_00004AM0001L01_1.fastq.gz
tests/assets/input_data/edinburgh_genomics/X12345_A_Researcher/20210922/12345_000004_000002_WESTwist_IDT-B/200922_A00001_0001_BHNTGMDMXX_7_00004AM0001L01_2.fastq.gz 0 additions, 0 deletions

...200922_A00001_0001_BHNTGMDMXX_7_00004AM0001L01_2.fastq.gz
tests/assets/input_data/edinburgh_genomics/X12345_A_Researcher/20210922/12345_000004_000002_WESTwist_IDT-B/200922_A00001_0001_BHNTGMDMXX_8_00004AM0001L01_1.fastq.gz 0 additions, 0 deletions

...200922_A00001_0001_BHNTGMDMXX_8_00004AM0001L01_1.fastq.gz
tests/assets/input_data/edinburgh_genomics/X12345_A_Researcher/20210922/12345_000004_000002_WESTwist_IDT-B/200922_A00001_0001_BHNTGMDMXX_8_00004AM0001L01_2.fastq.gz 0 additions, 0 deletions

...200922_A00001_0001_BHNTGMDMXX_8_00004AM0001L01_2.fastq.gz

with 196 additions and 23 deletions

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