Making min/max resources configurable, adding test stubs
Showing
- .gitlab-ci.yml 2 additions, 2 deletions.gitlab-ci.yml
- main.nf 0 additions, 1 deletionmain.nf
- nextflow.config 88 additions, 15 deletionsnextflow.config
- pipeline/var_calling.nf 106 additions, 5 deletionspipeline/var_calling.nf
- tests/assets/input_data/edinburgh_genomics/X12345_A_Researcher/20210922/12345_000001_000001_WESTwist_IDT-B/200922_A00001_0001_BHNTGMDMXX_1_00001AM0001L01_1.fastq.gz 0 additions, 0 deletions...200922_A00001_0001_BHNTGMDMXX_1_00001AM0001L01_1.fastq.gz
- tests/assets/input_data/edinburgh_genomics/X12345_A_Researcher/20210922/12345_000001_000001_WESTwist_IDT-B/200922_A00001_0001_BHNTGMDMXX_1_00001AM0001L01_2.fastq.gz 0 additions, 0 deletions...200922_A00001_0001_BHNTGMDMXX_1_00001AM0001L01_2.fastq.gz
- tests/assets/input_data/edinburgh_genomics/X12345_A_Researcher/20210922/12345_000001_000001_WESTwist_IDT-B/200922_A00001_0001_BHNTGMDMXX_2_00001AM0001L01_1.fastq.gz 0 additions, 0 deletions...200922_A00001_0001_BHNTGMDMXX_2_00001AM0001L01_1.fastq.gz
- tests/assets/input_data/edinburgh_genomics/X12345_A_Researcher/20210922/12345_000001_000001_WESTwist_IDT-B/200922_A00001_0001_BHNTGMDMXX_2_00001AM0001L01_2.fastq.gz 0 additions, 0 deletions...200922_A00001_0001_BHNTGMDMXX_2_00001AM0001L01_2.fastq.gz
- tests/assets/input_data/edinburgh_genomics/X12345_A_Researcher/20210922/12345_000002_000001_WESTwist_IDT-B/200922_A00001_0001_BHNTGMDMXX_3_00002AM0001L01_1.fastq.gz 0 additions, 0 deletions...200922_A00001_0001_BHNTGMDMXX_3_00002AM0001L01_1.fastq.gz
- tests/assets/input_data/edinburgh_genomics/X12345_A_Researcher/20210922/12345_000002_000001_WESTwist_IDT-B/200922_A00001_0001_BHNTGMDMXX_3_00002AM0001L01_2.fastq.gz 0 additions, 0 deletions...200922_A00001_0001_BHNTGMDMXX_3_00002AM0001L01_2.fastq.gz
- tests/assets/input_data/edinburgh_genomics/X12345_A_Researcher/20210922/12345_000002_000001_WESTwist_IDT-B/200922_A00001_0001_BHNTGMDMXX_4_00002AM0001L01_1.fastq.gz 0 additions, 0 deletions...200922_A00001_0001_BHNTGMDMXX_4_00002AM0001L01_1.fastq.gz
- tests/assets/input_data/edinburgh_genomics/X12345_A_Researcher/20210922/12345_000002_000001_WESTwist_IDT-B/200922_A00001_0001_BHNTGMDMXX_4_00002AM0001L01_2.fastq.gz 0 additions, 0 deletions...200922_A00001_0001_BHNTGMDMXX_4_00002AM0001L01_2.fastq.gz
- tests/assets/input_data/edinburgh_genomics/X12345_A_Researcher/20210922/12345_000003_000001_WESTwist_IDT-B/200922_A00001_0001_BHNTGMDMXX_5_00003AM0001L01_1.fastq.gz 0 additions, 0 deletions...200922_A00001_0001_BHNTGMDMXX_5_00003AM0001L01_1.fastq.gz
- tests/assets/input_data/edinburgh_genomics/X12345_A_Researcher/20210922/12345_000003_000001_WESTwist_IDT-B/200922_A00001_0001_BHNTGMDMXX_5_00003AM0001L01_2.fastq.gz 0 additions, 0 deletions...200922_A00001_0001_BHNTGMDMXX_5_00003AM0001L01_2.fastq.gz
- tests/assets/input_data/edinburgh_genomics/X12345_A_Researcher/20210922/12345_000003_000001_WESTwist_IDT-B/200922_A00001_0001_BHNTGMDMXX_6_00003AM0001L01_1.fastq.gz 0 additions, 0 deletions...200922_A00001_0001_BHNTGMDMXX_6_00003AM0001L01_1.fastq.gz
- tests/assets/input_data/edinburgh_genomics/X12345_A_Researcher/20210922/12345_000003_000001_WESTwist_IDT-B/200922_A00001_0001_BHNTGMDMXX_6_00003AM0001L01_2.fastq.gz 0 additions, 0 deletions...200922_A00001_0001_BHNTGMDMXX_6_00003AM0001L01_2.fastq.gz
- tests/assets/input_data/edinburgh_genomics/X12345_A_Researcher/20210922/12345_000004_000002_WESTwist_IDT-B/200922_A00001_0001_BHNTGMDMXX_7_00004AM0001L01_1.fastq.gz 0 additions, 0 deletions...200922_A00001_0001_BHNTGMDMXX_7_00004AM0001L01_1.fastq.gz
- tests/assets/input_data/edinburgh_genomics/X12345_A_Researcher/20210922/12345_000004_000002_WESTwist_IDT-B/200922_A00001_0001_BHNTGMDMXX_7_00004AM0001L01_2.fastq.gz 0 additions, 0 deletions...200922_A00001_0001_BHNTGMDMXX_7_00004AM0001L01_2.fastq.gz
- tests/assets/input_data/edinburgh_genomics/X12345_A_Researcher/20210922/12345_000004_000002_WESTwist_IDT-B/200922_A00001_0001_BHNTGMDMXX_8_00004AM0001L01_1.fastq.gz 0 additions, 0 deletions...200922_A00001_0001_BHNTGMDMXX_8_00004AM0001L01_1.fastq.gz
- tests/assets/input_data/edinburgh_genomics/X12345_A_Researcher/20210922/12345_000004_000002_WESTwist_IDT-B/200922_A00001_0001_BHNTGMDMXX_8_00004AM0001L01_2.fastq.gz 0 additions, 0 deletions...200922_A00001_0001_BHNTGMDMXX_8_00004AM0001L01_2.fastq.gz
Loading
Please register or sign in to comment