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igmmbioinformatics
trio-whole-exome
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ad3d7df6
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ad3d7df6
authored
3 years ago
by
ameyner2
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Update tool_and_data_change_tracking.md
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Ultra 2 SOP/doc updates
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@@ -3,7 +3,7 @@ Software | bcbio-1.1.5 (ultra) | bcbio-1.2.3 (ultra) | bcbio-1.2.8 (ultra2) | No
bcbio-nextgen | 1.1.5-b |
**1.2.3**
|
**1.2.8**
| Pipeline
bcftools | 1.9 |
**1.10.2**
|
**1.9**
| VCF manipulation suite
gatk4 | 4.1.2.0 |
**4.1.8.1**
|
**4.2.1.0**
| Alignment post-processing and variant calling
picard | 2.20.5 |
**2.23.3**
| 2.25.7
**
| VCF/BAM manipulation suite - only one VCF tool used
picard | 2.20.5 |
**2.23.3**
|
**
2.25.7**
| VCF/BAM manipulation suite - only one VCF tool used
samtools | 1.9 | 1.9 | 1.9 |
variant-effect-predictor | 97.3 |
**100.4**
| 100.4 | VCF annotations
bamtools | 2.4.0 | 2.4.0 | 2.4.0 |
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