Update Software_installation_ultra2.md

docs/Software_installation_ultra2.md

-# Installation of software for trio whole exome project
+# Ultra2 - Installation of software for trio whole exome project
 
 ## Aspera
 
@@ -48,11 +48,20 @@ DATE=`date +%Y%m%d%H%M`
 /home/u035/project/software/bcbio/tools/bin/bcbio_nextgen.py upgrade -u skip --datatarget vep &> bcbio_install_logs/bcbio_install_datatarget_vep_${DATE}.log
 ```
 
-gnomAD 3.1.1 installation will take about 6 days (old ultra). Might be faster on ultra2.
+We already had gnomAD 3.0 compiled and downloaded on the ultra2 bcbio installation, so this gets copied to `/home/u035/u035/shared/software/bcbio/genomes/Hsapiens/hg38/variation`.
+
+```
+cd /home/u035/u035/shared/software/bcbio/genomes/Hsapiens/hg38/variation
+scp ultra.epcc.ed.ac.uk:/home/u035/project/software/bcbio/genomes/Hsapiens/hg38/variation/gnomad_genome.vcf.gz ./
+scp ultra.epcc.ed.ac.uk:/home/u035/project/software/bcbio/genomes/Hsapiens/hg38/variation/gnomad_genome.vcf.gz.csi ./
+scp ultra.epcc.ed.ac.uk:/home/u035/project/software/bcbio/genomes/Hsapiens/hg38/variation/gnomad_genome.vcf.gz.tbi ./
+```
+
+However, if needed, re-generate it like this. It took about 6 days on old ultra.
 
 ```
 DATE=`date +%Y%m%d%H%M`
-/home/u035/project/software/bcbio/tools/bin/bcbio_nextgen.py upgrade -u skip --datatarget gnomad &> bcbio_install_logs/bcbio_install_datatarget_gnomad_${DATE}.log
+/home/u035/u035/shared/software/bcbio/tools/bin/bcbio_nextgen.py upgrade -u skip --datatarget gnomad &> bcbio_install_datatarget_gnomad_${DATE}.log
 ```
 
 Increase JVM memory for GATK in galaxy/bcbio_system.yaml