# Standard operating procedure - Alignment, variant calling, annotation, compression, and storage of trio whole exome samples at the Edinburgh Parallel Computing Centre
This SOP applies to batches of family/trio samples where trio whole exome sequencing has been performed by Edinburgh Genomics (EdGE) or the Edinburgh Clinical Research Facility (ECRF). It assumes that data has been successfully transferred to the Edinburgh Parallel Computing Centre (EPCC) (see SOP: Transfer of whole exome sequencing samples from Edinburgh Genomics to Edinburgh Parallel Computing Centre). Scripts are version controlled on the University of Edinburgh gitlab server `gitlab.ecdf.ed.ac.uk/igmmbioinformatics/trio-whole-exome`. Request access by e-mail: alison.meynert@igmm.ed.ac.uk.
This SOP applies to batches of family/trio samples where trio whole exome sequencing has been performed by Edinburgh Genomics (EdGE) or the Edinburgh Clinical Research Facility (ECRF). It assumes that data has been successfully transferred to the Edinburgh Parallel Computing Centre (EPCC) (see SOP: Transfer of whole exome sequencing samples from Edinburgh Genomics to Edinburgh Parallel Computing Centre). Scripts are version controlled on the University of Edinburgh gitlab server `gitlab.ecdf.ed.ac.uk/igmmbioinformatics/trio-whole-exome`.
