.gitlab-ci.yml

assets/trio_whole_exome_bcbio_template.yaml

bin/G2P.pm

bin/NHS_WES_check_PED_aff_probands.py

bin/NHS_WES_check_PED_quad.py

bin/NHS_WES_extract_shared_vars.py

bin/NHS_WES_extract_trio_FAM_PRO_ID.py

bin/NHS_WES_filter_LQ_GT.py

bin/NHS_WES_generate_DEC_IGV.py

bin/NHS_WES_generate_DEC_IGV.py.v1

bin/NHS_WES_generate_DEC_IGV.py_wrong_gene_trans

bin/NHS_WES_generate_DEC_IGV_aff_probands.py

bin/NHS_WES_generate_DEC_IGV_sib_from_quad.py

bin/NHS_WES_generate_DEC_IGV_trio_from_quad.py

bin/NHS_WES_generate_aff_sib_ped.py

bin/NHS_WES_generate_coverage_result_file.py

bin/NHS_WES_generate_trio_VCF.py

bin/NHS_WES_generate_trio_ped.py

bin/NHS_WES_trio_cram_setup.sh

bin/NHS_WES_trio_delete_BAM.sh