commit functioning test pipeline commit (fca1deaf) · Commits · igmmbioinformatics / trio-whole-exome · GitLab

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fca1deaf

Commit fca1deaf authored 2 years ago by 3mma-mack

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commit functioning test pipeline commit

parent 607d6f79

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Changes 10

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main.nf 2 additions, 2 deletions

main.nf
nextflow.config 2 additions, 2 deletions

nextflow.config
pipeline/cnv_calling.nf 85 additions, 4 deletions

pipeline/cnv_calling.nf
tests/assets/input_data/ped_files/giab_test_trios.ped 3 additions, 3 deletions

tests/assets/input_data/ped_files/giab_test_trios.ped
tests/assets/input_data/sample_sheets/giab_test_non_trios.tsv 7 additions, 7 deletions

...s/assets/input_data/sample_sheets/giab_test_non_trios.tsv
tests/assets/input_data/sample_sheets/giab_test_trios.tsv 4 additions, 3 deletions

tests/assets/input_data/sample_sheets/giab_test_trios.tsv
tests/assets/input_data/sample_sheets/giab_test_trios.tsv.save 6 additions, 0 deletions

.../assets/input_data/sample_sheets/giab_test_trios.tsv.save
tests/run_giab_tests.sh 9 additions, 9 deletions

tests/run_giab_tests.sh
tests/scripts/bcbio_nextgen.py 0 additions, 0 deletions

tests/scripts/bcbio_nextgen.py
tests/scripts/bcbio_prepare_samples.py 0 additions, 0 deletions

tests/scripts/bcbio_prepare_samples.py

with 118 additions and 30 deletions

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