Commits · 7f061ccff6379f70e6d3a97ac942a643a321b6ca · igmmbioinformatics / trio-whole-exome

Dec 14, 2021
- Fixed command typo · 7bf99fbb
  ameyner2 authored 3 years ago
  
  7bf99fbb
Nov 22, 2021
- Update SOP_alignment_variant_annotation.md · ecbed605
  ameyner2 authored 3 years ago
  
  ecbed605
Nov 17, 2021
- Updated to include compression & md5 checksums (no archive required), and... · cf90a32a
  ameyner2 authored 3 years ago
  
  Updated to include compression & md5 checksums (no archive required), and added documentation around output file structure
  cf90a32a
- Fixed peddy parsing script for ultra2 · 419fd8d3
  ameyner2 authored 3 years ago
  
  419fd8d3
Nov 16, 2021
- First try at a CRF rapid run on ultra2 · 62f5abf3
  not populated not populated authored 3 years ago
  
  62f5abf3
Oct 04, 2021
- Added a cleanup step for bcbio config and param files · c331202b
  not populated not populated authored 3 years ago
  
  c331202b
- Renaming prepare bcbio config scripts for consistency · adde4a3c
  not populated not populated authored 3 years ago
  
  adde4a3c
- Use short project id for log files, move to prioritization next · ca876eab
  not populated not populated authored 3 years ago
  
  ca876eab
- Tidy up formatting · 5690f7f7
  not populated not populated authored 3 years ago
  
  5690f7f7
- MultiQC and PED check updated to ultra2 · f7cd78e2
  not populated not populated authored 3 years ago
  
  f7cd78e2
- _ultra2 docs moved to main copy · 7fe258a1
  not populated not populated authored 3 years ago
  
  7fe258a1
Jul 21, 2021
- Moved output cleanup to main pipeline doc · 06a48fb1
  ameyner2 authored 3 years ago
  
  ultra_last_commit
  
  06a48fb1
Apr 30, 2021
- Add version to config prep log for CRF data · e1785a53
  ameyner2 authored 3 years ago
  
  e1785a53
Apr 07, 2021
- Fixed comma in qsub · 729c19b1
  ameyner2 authored 3 years ago
  
  729c19b1
Sep 23, 2020
- Update SOP_alignment_variant_annotation.md · 3841d1c4
  ameyner2 authored 4 years ago
  
  3841d1c4
- Added analysis run version. · 765b1b68
  ameyner2 authored 4 years ago
  
  765b1b68
Sep 09, 2020
- Added CRF sample prep command · b00563bc
  ameyner2 authored 4 years ago
  
  b00563bc
Aug 27, 2020
- Added info about input reads from ECRF · 2b045e62
  ameyner2 authored 4 years ago
  
  2b045e62
- Fixed paths, needed abs path for MultiQC · a37dad4d
  ameyner2 authored 4 years ago
  
  a37dad4d
Aug 26, 2020
- Started documenting ECRF process. · 01106da9
  ameyner2 authored 4 years ago
  
  01106da9
Aug 19, 2020
- Tool path. · 07622dc8
  ameyner2 authored 4 years ago
  
  07622dc8
- Changed bcbio tools path. · 07b9158c
  ameyner2 authored 4 years ago
  
  07b9158c
Aug 17, 2020
- Added the remainder of the SOP copied from the Word document, with substitution of u035 for u027 · d19c3843
  ameyner2 authored 4 years ago
  
  d19c3843
- Test initial document. · ce80a695
  ameyner2 authored 4 years ago
  
  ce80a695