Variant prioritisation, cram compression
- Adds pre-DECIPHER variant prioritisation
- Modifies extract_*_FAM_PRO_ID.py
- Adds post-DECIPHER variant prioritisation for trios
- Uses DECIPHER_INTERNAL_IDs.txt from independent upload
- Had to refactor some of the scripts in
bin/
to work with Nextflow - Moves param defaults from main.nf to nextflow.config
- Splits Cram compression/decompression off into their own workflow
- Makes validation.nf less spammy
- Adds a bunch of documentaton of channel formats
- Makes test family IDs reflect reality better
Edited by mwham