Skip to content

Automated IGV

mwham requested to merge mwham_develop into master
  • Adds IGV stage (automated with xvfb) and end-of-pipeline output splitting from split_trio_solo_variants.py
  • Refactors and simplifies variant calling output files
  • Removes old prioritisation NF process
  • Merges variant_prioritisation_setup and variant_prioritisation workflows
    • Uses watchPath/fromPath to pick up or wait for decipher file
  • Adds missing test asset files
  • Adds exit statements to IGV batch files so we don't need to send sigterms to IGV
  • Fixes argparse in extract_solo_FAM_PRO_ID.py

Merge request reports