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v0.6: Automation, Tidyverse cleaning

mwham requested to merge mwham_dev into master
  • Uses a new, dedicated Docker container for running CI - see tests/Dockerfile
  • Using independently-deployed linkage tables to generate cleaned data with ISARIC columns
  • Cleaning tabular files and caching with R Tidyverse instead of pure Python
  • Adding automated data dependency cross-checking, cleaning and releasing - see bin/data_release.py
  • New report scripts - possible_mappings.py, unlinked_data.py
  • Adding dependency on R/Tidyverse
  • Removing dependency on OpenPyXL
Edited by mwham

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