Daily clinical measurements
New data source: clinical_data. Loaded from full ccp_data.csv table. Using this, it should be possible to join LIMS samples to clinical data from the same day, ± a day or two:
isaric=# SELECT distinct view_lims_data."Kit_ID", view_lims_data."Patient_ID", clinical_data.subjid, view_lims_data."Date_Collected", clinical_data.daily_dsstdat, clinical_data.dsterm, clinical_data.daily_invasive_prtrt, clinical_data.daily_fio2_combined FROM isaric.view_lims_data LEFT OUTER JOIN isaric.clinical_data ON canonical_isaric_id = subjid AND "Date_Collected" - daily_dsstdat BETWEEN -1 AND 1 ORDER BY "Kit_ID", subjid, "Date_Collected";
Kit_ID | Patient_ID | subjid | Date_Collected | daily_dsstdat | dsterm | daily_fio2_combined
----------+------------+------------+----------------+---------------+-----------+---------------------
CCP0001 | ABCDE001 | ABCDE-0001 | 2020-08-17 | 2020-08-16 | | 0.21
CCP0001 | ABCDE001 | ABCDE-0001 | 2020-08-17 | 2020-08-17 | | 0.28
CCP0002 | ABCDE001 | ABCDE-0001 | 2020-08-19 | 2020-08-19 | Discharge |
CCP0004 | ABCDE003 | ABCDE-0003 | 2020-08-16 | 2020-08-16 | | 0.21
CVRI0003 | ABCDE002 | ABCDE-0002 | 2020-08-16 | 2020-08-16 | | 0.21
(5 rows)