fix some more broken links detected by ebook conversion

doc/src/compute_coord_atom.txt

@@ -67,7 +67,7 @@ identify crystal-like atoms in a system, as discussed in "ten
 Wolde"_#tenWolde1.
 
 The ID of the previously specified "compute
-orientorder/atom"_compute_orientorder/atom command is specified as
+orientorder/atom"_compute_orientorder_atom.html command is specified as
 {orientorderID}.  The compute must invoke its {components} option to
 calculate components of the {Ybar_lm} vector for each atoms, as
 described in its documentation.  Note that orientorder/atom compute

doc/src/compute_pressure_uef.txt

@@ -27,8 +27,8 @@ compute 2 all pressure/uef my_temp_uef virial :pre
 
 This command is used to compute the pressure tensor in
 the reference frame of the applied flow field when
-"fix nvt/uef"_fix_nh_uef.html" or
-"fix npt/uef"_fix_nh_uef.html" is used.
+"fix nvt/uef"_fix_nh_uef.html or
+"fix npt/uef"_fix_nh_uef.html is used.
 It is not necessary to use this command to compute the scalar
 value of the pressure. A "compute pressure"_compute_pressure.html
 may be used for that purpose.

doc/src/compute_temp_uef.txt

@@ -24,8 +24,8 @@ compute 2 sel temp/uef :pre
 
 This command is used to compute the kinetic energy tensor in 
 the reference frame of the applied flow field when
-"fix nvt/uef"_fix_nh_uef.html" or
-"fix npt/uef"_fix_nh_uef.html" is used.
+"fix nvt/uef"_fix_nh_uef.html or
+"fix npt/uef"_fix_nh_uef.html is used.
 It is not necessary to use this command to compute the scalar
 value of the temperature. A "compute temp"_compute_temp.html 
 may be used for that purpose.