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Commit 3b44c3ff authored by Axel Kohlmeyer's avatar Axel Kohlmeyer
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remove non-ASCII characters from doc source files

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...@@ -464,7 +464,7 @@ supported. ...@@ -464,7 +464,7 @@ supported.
[References:] [References:]
Brown, W.M., Carrillo, J.-M.Y., Mishra, B., Gavhane, N., Thakker, F.M., De Kraker, A.R., Yamada, M., Ang, J.A., Plimpton, S.J., Optimizing Classical Molecular Dynamics in LAMMPS, in Intel Xeon Phi Processor High Performance Programming: Knights Landing Edition, J. Jeffers, J. Reinders, A. Sodani, Eds. Morgan Kaufmann. :ulb,l Brown, W.M., Carrillo, J.-M.Y., Mishra, B., Gavhane, N., Thakker, F.M., De Kraker, A.R., Yamada, M., Ang, J.A., Plimpton, S.J., "Optimizing Classical Molecular Dynamics in LAMMPS," in Intel Xeon Phi Processor High Performance Programming: Knights Landing Edition, J. Jeffers, J. Reinders, A. Sodani, Eds. Morgan Kaufmann. :ulb,l
Brown, W. M., Semin, A., Hebenstreit, M., Khvostov, S., Raman, K., Plimpton, S.J. Increasing Molecular Dynamics Simulation Rates with an 8-Fold Increase in Electrical Power Efficiency. 2016 International Conference for High Performance Computing. In press. :l Brown, W. M., Semin, A., Hebenstreit, M., Khvostov, S., Raman, K., Plimpton, S.J. Increasing Molecular Dynamics Simulation Rates with an 8-Fold Increase in Electrical Power Efficiency. 2016 International Conference for High Performance Computing. In press. :l
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...@@ -67,6 +67,6 @@ LAMMPS"_Section_start.html#start_3 section for more info. ...@@ -67,6 +67,6 @@ LAMMPS"_Section_start.html#start_3 section for more info.
:link(KC05) :link(KC05)
[(KC05)] A. N. Kolmogorov, V. H. Crespi, Phys. Rev. B 71, 235415 (2005) [(KC05)] A. N. Kolmogorov, V. H. Crespi, Phys. Rev. B 71, 235415 (2005)
:link(vanWijk) :link(vanWijk)
[(vanWijk)] M. M. van Wijk, A. Schuring, M. I. Katsnelson, and A. Fasolino, [(vanWijk)] M. M. van Wijk, A. Schuring, M. I. Katsnelson, and A. Fasolino,
Physical Review Letters, 113, 135504 (2014) Physical Review Letters, 113, 135504 (2014)
...@@ -50,7 +50,7 @@ NOTE: These pair styles have to be used together with the related oxDNA bond sty ...@@ -50,7 +50,7 @@ NOTE: These pair styles have to be used together with the related oxDNA bond sty
"bond_style oxdna/fene"_bond_oxdna.html). The coefficients "bond_style oxdna/fene"_bond_oxdna.html). The coefficients
in the above example have to be kept fixed and cannot be changed without reparametrizing the entire model. in the above example have to be kept fixed and cannot be changed without reparametrizing the entire model.
Example input and data files can be found in examples/USER/cgdna/examples/duplex1/ and /duplex2/. Example input and data files can be found in examples/USER/cgdna/examples/duplex1/ and /duplex2/.
A simple python setup tool which creates single straight or helical DNA strands, A simple python setup tool which creates single straight or helical DNA strands,
DNA duplexes or arrays of DNA duplexes can be found in examples/USER/cgdna/util/. DNA duplexes or arrays of DNA duplexes can be found in examples/USER/cgdna/util/.
A technical report with more information on the model, the structure of the input file, A technical report with more information on the model, the structure of the input file,
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