Merge branch 'master' of github.com:lammps/lammps

doc/src/fixes.txt

doc/src/lammps.book

src/REPLICA/prd.cpp

src/compute_bond_local.cpp

src/dump.cpp

src/finish.cpp

src/fix_halt.cpp

src/lmptype.h

src/neigh_derive.cpp

src/region.cpp