update documentation metadata files for recent changes

doc/src/lammps.book

@@ -59,6 +59,7 @@ dump_h5md.html
 dump_image.html
 dump_modify.html
 dump_molfile.html
+dump_nc.html
 echo.html
 fix.html
 fix_modify.html
@@ -152,6 +153,7 @@ fix_colvars.html
 fix_controller.html
 fix_deform.html
 fix_deposit.html
+fix_dpd_energy.html
 fix_drag.html
 fix_drude.html
 fix_drude_transform.html
@@ -272,6 +274,7 @@ fix_viscosity.html
 fix_viscous.html
 fix_wall.html
 fix_wall_gran.html
+fix_wall_gran_region.html
 fix_wall_piston.html
 fix_wall_reflect.html
 fix_wall_region.html
@@ -390,6 +393,7 @@ compute_voronoi_atom.html
 compute_xrd.html
 
 pair_adp.html
+pair_agni.html
 pair_airebo.html
 pair_awpmd.html
 pair_beck.html
@@ -622,3 +626,4 @@ USER/atc/man_unfix_flux.html
 USER/atc/man_unfix_nodes.html
 USER/atc/man_write_atom_weights.html
 USER/atc/man_write_restart.html
+

doc/src/pairs.txt

@@ -6,6 +6,7 @@ Pair Styles :h1
    :maxdepth: 1
 
    pair_adp
+   pair_agni
    pair_airebo
    pair_awpmd
    pair_beck