update manual content list for recent updates

doc/src/lammps.book

@@ -28,6 +28,7 @@ tutorial_pylammps.html
 body.html
 manifolds.html
 
+lammps_commands.html
 angle_coeff.html
 angle_style.html
 atom_modify.html
@@ -138,7 +139,6 @@ fix_adapt_fep.html
 fix_addforce.html
 fix_addtorque.html
 fix_append_atoms.html
-fix_atc.html
 fix_atom_swap.html
 fix_ave_atom.html
 fix_ave_chunk.html
@@ -276,6 +276,7 @@ fix_spring_self.html
 fix_srd.html
 fix_store_force.html
 fix_store_state.html
+fix_surface_global.html
 fix_temp_berendsen.html
 fix_temp_csvr.html
 fix_temp_rescale.html
@@ -422,11 +423,13 @@ pair_airebo.html
 pair_awpmd.html
 pair_beck.html
 pair_body.html
+pair_body_rounded_polygon.html
 pair_bop.html
 pair_born.html
 pair_brownian.html
 pair_buck.html
 pair_buck_long.html
+pair_buck6d_coul_gauss.html
 pair_charmm.html
 pair_class2.html
 pair_colloid.html
@@ -538,6 +541,7 @@ bond_zero.html
 angle_charmm.html
 angle_class2.html
 angle_cosine.html
+angle_cosine_buck6d.html
 angle_cosine_delta.html
 angle_cosine_periodic.html
 angle_cosine_shift.html
@@ -577,11 +581,13 @@ improper_distance.html
 improper_fourier.html
 improper_harmonic.html
 improper_hybrid.html
+improper_inversion_harmonic.html
 improper_none.html
 improper_ring.html
 improper_umbrella.html
 improper_zero.html
 
+fix_atc.html
 USER/atc/man_add_molecule.html
 USER/atc/man_add_species.html
 USER/atc/man_atom_element_map.html