rename some USER/misc dirs

examples/USER/misc/filter_corotate/data.bpti

examples/USER/misc/filter_corotate/data.peptide

examples/USER/misc/filter_corotate/in.bpti

examples/USER/misc/filter_corotate/in.peptide

examples/USER/misc/filter_corotate/log.10Mar2017.bpti.g++.1

examples/USER/misc/filter_corotate/log.10Mar2017.bpti.g++.4

...les/USER/misc/filter_corotate/log.10Mar2017.peptide.g++.1

...les/USER/misc/filter_corotate/log.10Mar2017.peptide.g++.4

examples/USER/misc/gauss_diel/data.gauss-diel

examples/USER/misc/gauss_diel/in.gauss-diel

examples/USER/misc/gauss_diel/in.gauss-diel-cg

examples/USER/misc/gauss_diel/in.gauss-diel-split

examples/USER/misc/gauss_diel/log.gauss-diel

examples/USER/misc/gauss_diel/log.gauss-diel-cg

examples/USER/misc/gauss_diel/log.gauss-diel-split

examples/USER/misc/ipi/C.opt.tersoff

examples/USER/misc/ipi/README

examples/USER/misc/ipi/data.graphene

examples/USER/misc/ipi/i-pi_input.xml

examples/USER/misc/ipi/i-pi_positions.xyz