Skip to content
GitLab
Explore
Sign in
Primary navigation
Search or go to…
Project
L
lammps
Manage
Activity
Members
Labels
Plan
Issues
Issue boards
Milestones
Wiki
Code
Merge requests
Repository
Branches
Commits
Tags
Repository graph
Compare revisions
Snippets
Build
Pipelines
Jobs
Pipeline schedules
Artifacts
Deploy
Releases
Container Registry
Model registry
Operate
Environments
Monitor
Incidents
Analyze
Value stream analytics
Contributor analytics
CI/CD analytics
Repository analytics
Model experiments
Help
Help
Support
GitLab documentation
Compare GitLab plans
Community forum
Contribute to GitLab
Provide feedback
Keyboard shortcuts
?
Snippets
Groups
Projects
Show more breadcrumbs
multiscale
lammps
Commits
7e779d16
Commit
7e779d16
authored
6 years ago
by
Axel Kohlmeyer
Browse files
Options
Downloads
Patches
Plain Diff
correct broken links in manual reported by 'make html'
parent
b776f0f2
No related branches found
No related tags found
No related merge requests found
Changes
3
Hide whitespace changes
Inline
Side-by-side
Showing
3 changed files
doc/src/fix_hyper_global.txt
+4
-5
4 additions, 5 deletions
doc/src/fix_hyper_global.txt
doc/src/fix_hyper_local.txt
+4
-4
4 additions, 4 deletions
doc/src/fix_hyper_local.txt
doc/src/hyper.txt
+1
-1
1 addition, 1 deletion
doc/src/hyper.txt
with
9 additions
and
10 deletions
doc/src/fix_hyper_global.txt
+
4
−
5
View file @
7e779d16
...
...
@@ -190,11 +190,10 @@ The "fix_modify"_fix_modify.html {energy} option is supported by this
fix to add the energy of the bias potential to the the system's
potential energy as part of "thermodynamic output"_thermo_style.html.
This fix computes a global scalar and global vector of length 11,
which can be accessed by various "output
commands"_Section_howto.html#howto_15. The scalar is the magnitude of
the bias potential (energy units) applied on the current timestep.
The vector stores the following quantities:
This fix computes a global scalar and global vector of length 11, which
can be accessed by various "output commands"_Howto_output.html". The
scalar is the magnitude of the bias potential (energy units) applied on
the current timestep. The vector stores the following quantities:
1 = boost factor on this step (unitless)
2 = max strain Eij of any bond on this step (unitless)
...
...
This diff is collapsed.
Click to expand it.
doc/src/fix_hyper_local.txt
+
4
−
4
View file @
7e779d16
...
...
@@ -62,7 +62,7 @@ bond-boost form of a bias potential for HD is due to Miron and
Fichthorn as described in "(Miron)"_#Mironlhd.
To understand this description, you should first read the description
of the GHD algorithm on the "fix hyper/global"_fix_hyper
/
global.html
of the GHD algorithm on the "fix hyper/global"_fix_hyper
_
global.html
doc page. This description of LHD builds on the GHD description.
The definition of bonds, Eij, and Emax are the same for GHD and LHD.
...
...
@@ -284,7 +284,7 @@ potential energy as part of "thermodynamic output"_thermo_style.html.
This fix computes a global scalar and global vector of length 23,
which can be accessed by various "output
commands"_
Section_howto.html#howto_15
. The scalar is the magnitude of
commands"_
Howto_output.html
. The scalar is the magnitude of
the bias potential (energy units) applied on the current timestep,
summed over all biased bonds. The vector stores the following
quantities:
...
...
@@ -385,8 +385,8 @@ minimization"_minimize.html.
[Restrictions:]
This fix is part of the REPLICA package. It is only enabled if LAMMPS
was built with that package. See the "
Making
LAMMPS"_Section_start.html#start_3 section
for more info.
was built with that package. See the "
Build package"_Build_package.html
doc page
for more info.
[Related commands:]
...
...
This diff is collapsed.
Click to expand it.
doc/src/hyper.txt
+
1
−
1
View file @
7e779d16
...
...
@@ -187,6 +187,6 @@ The option defaults are min = 0.1 0.1 40 50 and time = steps.
[(Voter2013)] S. Y. Kim, D. Perez, A. F. Voter, J Chem Phys, 139,
144110 (2013).
:link(Voter2002
pr
d)
:link(Voter2002
h
d)
[(Voter2002)] Voter, Montalenti, Germann, Annual Review of Materials
Research 32, 321 (2002).
This diff is collapsed.
Click to expand it.
Preview
0%
Loading
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Save comment
Cancel
Please
register
or
sign in
to comment