Merge pull request #1056 from lammps/doc-tweak

tweaks to Manual formatting

Merge pull request #1056 from lammps/doc-tweak
tweaks to Manual formatting
8c0c6659 · Steve Plimpton · GitHub · 17e5da97 · 47f02b32 · 8c0c6659
Unverified Commit 8c0c6659 authored 6 years ago by Steve Plimpton Committed by GitHub 6 years ago
--- a/doc/src/Build.txt
+++ b/doc/src/Build.txt
@@ -36,8 +36,8 @@ END_RST -->
 "Build LAMMPS with CMake"_Build_cmake.html
 "Build LAMMPS with make"_Build_make.html
 "Link LAMMPS as a library to another code"_Build_link.html
-"Basic build options: serial/parallel, compilers, executable/library"_Build_basics.html
-"Optional build settings"_Build_settings.html :all(b)
+"Basic build options"_Build_basics.html
+"Optional build settings"_Build_settings.html
 "Include packages in build"_Build_package.html
 "Packages with extra build options"_Build_extras.html :all(b)


--- a/doc/src/Build_extras.txt
+++ b/doc/src/Build_extras.txt
@@ -25,6 +25,7 @@ You may need to tell LAMMPS where it is found on your system.

 This is the list of packages that may require additional steps.

+"COMPRESS"_#compress,
 "GPU"_#gpu,
 "KIM"_#kim,
 "KOKKOS"_#kokkos,
@@ -231,7 +232,7 @@ Pascal61 = NVIDIA Pascal generation CC 6.1 :ul

 For multicore CPUs using OpenMP, set these 2 variables.

-D KOKKOS_ARCH=archCPU         # archCPU = CPU from list above :pre
+-D KOKKOS_ARCH=archCPU         # archCPU = CPU from list above
 -D KOKKOS_ENABLE_OPENMP=yes :pre

 For Intel KNLs using OpenMP, set these 2 variables:
@@ -710,16 +711,14 @@ Makefile.knl files for examples.
 For CPUs:

 OPTFLAGS =      -xHost -O2 -fp-model fast=2 -no-prec-div -qoverride-limits -qopt-zmm-usage=high
-CCFLAGS =	-g -qopenmp -DLAMMPS_MEMALIGN=64 -no-offload \
-                -fno-alias -ansi-alias -restrict $(OPTFLAGS)
+CCFLAGS =	-g -qopenmp -DLAMMPS_MEMALIGN=64 -no-offload -fno-alias -ansi-alias -restrict $(OPTFLAGS)
 LINKFLAGS =	-g -qopenmp $(OPTFLAGS)
 LIB =           -ltbbmalloc :pre

 For KNLs:

 OPTFLAGS =      -xMIC-AVX512 -O2 -fp-model fast=2 -no-prec-div -qoverride-limits
-CCFLAGS =	-g -qopenmp -DLAMMPS_MEMALIGN=64 -no-offload \
-                -fno-alias -ansi-alias -restrict $(OPTFLAGS)
+CCFLAGS =	-g -qopenmp -DLAMMPS_MEMALIGN=64 -no-offload -fno-alias -ansi-alias -restrict $(OPTFLAGS)
 LINKFLAGS =	-g -qopenmp $(OPTFLAGS)
 LIB =           -ltbbmalloc :pre

@@ -850,7 +849,7 @@ lib/quip/README file for details on how to do this.

 [CMake build]:

-D QUIP_LIBRARIES=path    # path to libquip.a (only needed if a custom location) 
+-D QUIP_LIBRARIES=path     # path to libquip.a (only needed if a custom location) :pre

 CMake will not download and build the QUIP library.  But once you have
 done that, a CMake build of LAMMPS with "-D PKG_USER-QUIP=yes" should

--- a/doc/src/Build_package.txt
+++ b/doc/src/Build_package.txt
@@ -36,6 +36,7 @@ steps, as explained on the "Build extras"_Build_extras.html doc page.
 These links take you to the extra instructions for those select
 packages:

+"COMPRESS"_Build_extras.html#compress,
 "GPU"_Build_extras.html#gpu,
 "KIM"_Build_extras.html#kim,
 "KOKKOS"_Build_extras.html#kokkos,

--- a/doc/src/Intro_authors.txt
+++ b/doc/src/Intro_authors.txt
@@ -30,7 +30,7 @@ the packages they have written are somewhat unique to LAMMPS and the
 code would not be as general-purpose as it is without their expertise
 and efforts.

-Richard Berger (Temple U), GitHub site and Sphinx doc pages
+Richard Berger (Temple U), Python interface, GitHub site, Sphinx doc pages
 Roy Pollock (LLNL), Ewald and PPPM solvers
 Mike Brown (ORNL), brownw at ornl.gov, GPU and USER-INTEL packages
 Greg Wagner (Sandia), gjwagne at sandia.gov, MEAM package for MEAM potential

--- a/doc/src/Manual.txt
+++ b/doc/src/Manual.txt
 <!-- HTML_ONLY -->
 <HEAD>
 <TITLE>LAMMPS Users Manual</TITLE>
-<META NAME="docnumber" CONTENT="2 Aug 2018 version">
+<META NAME="docnumber" CONTENT="15 Aug 2018 version">
 <META NAME="author" CONTENT="http://lammps.sandia.gov - Sandia National Laboratories">
 <META NAME="copyright" CONTENT="Copyright (2003) Sandia Corporation. This software and manual is distributed under the GNU General Public License.">
 </HEAD>
@@ -21,7 +21,7 @@
 :line

 LAMMPS Documentation :c,h1
-2 Aug 2018 version :c,h2
+15 Aug 2018 version :c,h2

 "What is a LAMMPS version?"_Manual_version.html


--- a/doc/src/Speed.txt
+++ b/doc/src/Speed.txt
@@ -37,11 +37,6 @@ hardware platforms.
   Speed_measure
   Speed_tips
   Speed_packages
-   Speed_gpu
-   Speed_intel
-   Speed_kokkos
-   Speed_omp
-   Speed_opt
   Speed_compare

 END_RST -->