Merge pull request #737 from akohlmey/collected-bugfixes

doc/src/create_atoms.txt

doc/src/create_bonds.txt

lib/atc/Matrix.h

src/Makefile

src/USER-OMP/fix_neigh_history_omp.cpp

src/compute_msd_chunk.cpp

src/fix_ave_chunk.cpp

src/fix_neigh_history.cpp

src/fix_store.cpp