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Update Colvars library to version 2016-12-22
Significant code cleanup and several fixes (walls + extended Lagrangian) New harmonicWalls bias to apply confining boundaries with time-dependent force constant & integration
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- doc/src/PDF/colvars-refman-lammps.pdf 0 additions, 0 deletionsdoc/src/PDF/colvars-refman-lammps.pdf
- doc/src/fix_colvars.txt 6 additions, 13 deletionsdoc/src/fix_colvars.txt
- lib/colvars/colvar.cpp 100 additions, 52 deletionslib/colvars/colvar.cpp
- lib/colvars/colvar.h 31 additions, 5 deletionslib/colvars/colvar.h
- lib/colvars/colvaratoms.cpp 13 additions, 1 deletionlib/colvars/colvaratoms.cpp
- lib/colvars/colvaratoms.h 10 additions, 1 deletionlib/colvars/colvaratoms.h
- lib/colvars/colvarbias.cpp 135 additions, 6 deletionslib/colvars/colvarbias.cpp
- lib/colvars/colvarbias.h 64 additions, 16 deletionslib/colvars/colvarbias.h
- lib/colvars/colvarbias_abf.cpp 17 additions, 84 deletionslib/colvars/colvarbias_abf.cpp
- lib/colvars/colvarbias_abf.h 9 additions, 2 deletionslib/colvars/colvarbias_abf.h
- lib/colvars/colvarbias_alb.cpp 15 additions, 47 deletionslib/colvars/colvarbias_alb.cpp
- lib/colvars/colvarbias_alb.h 11 additions, 3 deletionslib/colvars/colvarbias_alb.h
- lib/colvars/colvarbias_histogram.cpp 14 additions, 57 deletionslib/colvars/colvarbias_histogram.cpp
- lib/colvars/colvarbias_histogram.h 9 additions, 2 deletionslib/colvars/colvarbias_histogram.h
- lib/colvars/colvarbias_meta.cpp 129 additions, 130 deletionslib/colvars/colvarbias_meta.cpp
- lib/colvars/colvarbias_meta.h 16 additions, 10 deletionslib/colvars/colvarbias_meta.h
- lib/colvars/colvarbias_restraint.cpp 960 additions, 406 deletionslib/colvars/colvarbias_restraint.cpp
- lib/colvars/colvarbias_restraint.h 191 additions, 65 deletionslib/colvars/colvarbias_restraint.h
- lib/colvars/colvarcomp.cpp 40 additions, 4 deletionslib/colvars/colvarcomp.cpp
- lib/colvars/colvarcomp.h 77 additions, 314 deletionslib/colvars/colvarcomp.h
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