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multiscale
lammps
Commits
fab2f01a
Commit
fab2f01a
authored
8 years ago
by
sjplimp
Browse files
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git-svn-id:
svn://svn.icms.temple.edu/lammps-ro/trunk@15531
f3b2605a-c512-4ea7-a41b-209d697bcdaa
parent
ae458497
No related branches found
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Changes
5
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5 changed files
src/error.cpp
+61
-1
61 additions, 1 deletion
src/error.cpp
src/error.h
+34
-0
34 additions, 0 deletions
src/error.h
src/library.cpp
+35
-2
35 additions, 2 deletions
src/library.cpp
src/library.h
+3
-0
3 additions, 0 deletions
src/library.h
src/main.cpp
+15
-2
15 additions, 2 deletions
src/main.cpp
with
148 additions
and
5 deletions
src/error.cpp
+
61
−
1
View file @
fab2f01a
...
@@ -13,6 +13,7 @@
...
@@ -13,6 +13,7 @@
#include
<mpi.h>
#include
<mpi.h>
#include
<stdlib.h>
#include
<stdlib.h>
#include
<string.h>
#include
"error.h"
#include
"error.h"
#include
"universe.h"
#include
"universe.h"
#include
"output.h"
#include
"output.h"
...
@@ -21,7 +22,7 @@ using namespace LAMMPS_NS;
...
@@ -21,7 +22,7 @@ using namespace LAMMPS_NS;
/* ---------------------------------------------------------------------- */
/* ---------------------------------------------------------------------- */
Error
::
Error
(
LAMMPS
*
lmp
)
:
Pointers
(
lmp
)
{}
Error
::
Error
(
LAMMPS
*
lmp
)
:
Pointers
(
lmp
)
,
last_error_message
(
NULL
)
{}
/* ----------------------------------------------------------------------
/* ----------------------------------------------------------------------
called by all procs in universe
called by all procs in universe
...
@@ -47,8 +48,14 @@ void Error::universe_all(const char *file, int line, const char *str)
...
@@ -47,8 +48,14 @@ void Error::universe_all(const char *file, int line, const char *str)
}
}
if
(
universe
->
ulogfile
)
fclose
(
universe
->
ulogfile
);
if
(
universe
->
ulogfile
)
fclose
(
universe
->
ulogfile
);
#ifdef LAMMPS_EXCEPTIONS
char
msg
[
100
];
sprintf
(
msg
,
"ERROR: %s (%s:%d)
\n
"
,
str
,
file
,
line
);
throw
LAMMPSException
(
msg
);
#else
MPI_Finalize
();
MPI_Finalize
();
exit
(
1
);
exit
(
1
);
#endif
}
}
/* ----------------------------------------------------------------------
/* ----------------------------------------------------------------------
...
@@ -61,7 +68,14 @@ void Error::universe_one(const char *file, int line, const char *str)
...
@@ -61,7 +68,14 @@ void Error::universe_one(const char *file, int line, const char *str)
if
(
universe
->
uscreen
)
if
(
universe
->
uscreen
)
fprintf
(
universe
->
uscreen
,
"ERROR on proc %d: %s (%s:%d)
\n
"
,
fprintf
(
universe
->
uscreen
,
"ERROR on proc %d: %s (%s:%d)
\n
"
,
universe
->
me
,
str
,
file
,
line
);
universe
->
me
,
str
,
file
,
line
);
#ifdef LAMMPS_EXCEPTIONS
char
msg
[
100
];
sprintf
(
msg
,
"ERROR: %s (%s:%d)
\n
"
,
str
,
file
,
line
);
throw
LAMMPSAbortException
(
msg
,
universe
->
uworld
);
#else
MPI_Abort
(
universe
->
uworld
,
1
);
MPI_Abort
(
universe
->
uworld
,
1
);
#endif
}
}
/* ----------------------------------------------------------------------
/* ----------------------------------------------------------------------
...
@@ -95,6 +109,16 @@ void Error::all(const char *file, int line, const char *str)
...
@@ -95,6 +109,16 @@ void Error::all(const char *file, int line, const char *str)
if
(
logfile
)
fprintf
(
logfile
,
"ERROR: %s (%s:%d)
\n
"
,
str
,
file
,
line
);
if
(
logfile
)
fprintf
(
logfile
,
"ERROR: %s (%s:%d)
\n
"
,
str
,
file
,
line
);
}
}
#ifdef LAMMPS_EXCEPTIONS
char
msg
[
100
];
sprintf
(
msg
,
"ERROR: %s (%s:%d)
\n
"
,
str
,
file
,
line
);
if
(
universe
->
nworlds
>
1
)
{
throw
LAMMPSAbortException
(
msg
,
universe
->
uworld
);
}
throw
LAMMPSException
(
msg
);
#else
if
(
output
)
delete
output
;
if
(
output
)
delete
output
;
if
(
screen
&&
screen
!=
stdout
)
fclose
(
screen
);
if
(
screen
&&
screen
!=
stdout
)
fclose
(
screen
);
if
(
logfile
)
fclose
(
logfile
);
if
(
logfile
)
fclose
(
logfile
);
...
@@ -102,6 +126,7 @@ void Error::all(const char *file, int line, const char *str)
...
@@ -102,6 +126,7 @@ void Error::all(const char *file, int line, const char *str)
if
(
universe
->
nworlds
>
1
)
MPI_Abort
(
universe
->
uworld
,
1
);
if
(
universe
->
nworlds
>
1
)
MPI_Abort
(
universe
->
uworld
,
1
);
MPI_Finalize
();
MPI_Finalize
();
exit
(
1
);
exit
(
1
);
#endif
}
}
/* ----------------------------------------------------------------------
/* ----------------------------------------------------------------------
...
@@ -121,7 +146,14 @@ void Error::one(const char *file, int line, const char *str)
...
@@ -121,7 +146,14 @@ void Error::one(const char *file, int line, const char *str)
if
(
universe
->
uscreen
)
if
(
universe
->
uscreen
)
fprintf
(
universe
->
uscreen
,
"ERROR on proc %d: %s (%s:%d)
\n
"
,
fprintf
(
universe
->
uscreen
,
"ERROR on proc %d: %s (%s:%d)
\n
"
,
universe
->
me
,
str
,
file
,
line
);
universe
->
me
,
str
,
file
,
line
);
#ifdef LAMMPS_EXCEPTIONS
char
msg
[
100
];
sprintf
(
msg
,
"ERROR on proc %d: %s (%s:%d)
\n
"
,
me
,
str
,
file
,
line
);
throw
LAMMPSAbortException
(
msg
,
world
);
#else
MPI_Abort
(
world
,
1
);
MPI_Abort
(
world
,
1
);
#endif
}
}
/* ----------------------------------------------------------------------
/* ----------------------------------------------------------------------
...
@@ -165,3 +197,31 @@ void Error::done(int status)
...
@@ -165,3 +197,31 @@ void Error::done(int status)
MPI_Finalize
();
MPI_Finalize
();
exit
(
status
);
exit
(
status
);
}
}
/* ----------------------------------------------------------------------
return the last error message reported by LAMMPS (only used if
compiled with -DLAMMPS_EXCEPTIONS)
------------------------------------------------------------------------- */
char
*
Error
::
get_last_error
()
const
{
return
last_error_message
;
}
/* ----------------------------------------------------------------------
set the last error message (only used if compiled with
-DLAMMPS_EXCEPTIONS)
------------------------------------------------------------------------- */
void
Error
::
set_last_error
(
const
char
*
msg
)
{
delete
[]
last_error_message
;
if
(
msg
)
{
last_error_message
=
new
char
[
strlen
(
msg
)
+
1
];
strcpy
(
last_error_message
,
msg
);
}
else
{
last_error_message
=
NULL
;
}
}
This diff is collapsed.
Click to expand it.
src/error.h
+
34
−
0
View file @
fab2f01a
...
@@ -15,10 +15,41 @@
...
@@ -15,10 +15,41 @@
#define LMP_ERROR_H
#define LMP_ERROR_H
#include
"pointers.h"
#include
"pointers.h"
#include
<string>
#include
<exception>
namespace
LAMMPS_NS
{
namespace
LAMMPS_NS
{
class
LAMMPSException
:
public
std
::
exception
{
public:
std
::
string
message
;
LAMMPSException
(
std
::
string
msg
)
:
message
(
msg
)
{
}
~
LAMMPSException
()
throw
()
{
}
virtual
const
char
*
what
()
const
throw
()
{
return
message
.
c_str
();
}
};
class
LAMMPSAbortException
:
public
LAMMPSException
{
public:
MPI_Comm
universe
;
LAMMPSAbortException
(
std
::
string
msg
,
MPI_Comm
universe
)
:
LAMMPSException
(
msg
),
universe
(
universe
)
{
}
};
class
Error
:
protected
Pointers
{
class
Error
:
protected
Pointers
{
char
*
last_error_message
;
public:
public:
Error
(
class
LAMMPS
*
);
Error
(
class
LAMMPS
*
);
...
@@ -31,6 +62,9 @@ class Error : protected Pointers {
...
@@ -31,6 +62,9 @@ class Error : protected Pointers {
void
warning
(
const
char
*
,
int
,
const
char
*
,
int
=
1
);
void
warning
(
const
char
*
,
int
,
const
char
*
,
int
=
1
);
void
message
(
const
char
*
,
int
,
const
char
*
,
int
=
1
);
void
message
(
const
char
*
,
int
,
const
char
*
,
int
=
1
);
void
done
(
int
=
0
);
// 1 would be fully backwards compatible
void
done
(
int
=
0
);
// 1 would be fully backwards compatible
char
*
get_last_error
()
const
;
void
set_last_error
(
const
char
*
msg
);
};
};
}
}
...
...
This diff is collapsed.
Click to expand it.
src/library.cpp
+
35
−
2
View file @
fab2f01a
...
@@ -108,8 +108,15 @@ void lammps_file(void *ptr, char *str)
...
@@ -108,8 +108,15 @@ void lammps_file(void *ptr, char *str)
char
*
lammps_command
(
void
*
ptr
,
char
*
str
)
char
*
lammps_command
(
void
*
ptr
,
char
*
str
)
{
{
LAMMPS
*
lmp
=
(
LAMMPS
*
)
ptr
;
LAMMPS
*
lmp
=
(
LAMMPS
*
)
ptr
;
return
lmp
->
input
->
one
(
str
);
Error
*
error
=
lmp
->
error
;
try
{
return
lmp
->
input
->
one
(
str
);
}
catch
(
LAMMPSException
&
e
)
{
error
->
set_last_error
(
e
.
message
.
c_str
());
return
NULL
;
}
}
}
/* ----------------------------------------------------------------------
/* ----------------------------------------------------------------------
...
@@ -593,3 +600,29 @@ void lammps_scatter_atoms(void *ptr, char *name,
...
@@ -593,3 +600,29 @@ void lammps_scatter_atoms(void *ptr, char *name,
}
}
}
}
}
}
/* ----------------------------------------------------------------------
Check if a new error message
------------------------------------------------------------------------- */
int
lammps_has_error
(
void
*
ptr
)
{
LAMMPS
*
lmp
=
(
LAMMPS
*
)
ptr
;
Error
*
error
=
lmp
->
error
;
return
error
->
get_last_error
()
?
1
:
0
;
}
/* ----------------------------------------------------------------------
Copy the last error message of LAMMPS into a character buffer
------------------------------------------------------------------------- */
int
lammps_get_last_error_message
(
void
*
ptr
,
char
*
buffer
,
int
buffer_size
)
{
LAMMPS
*
lmp
=
(
LAMMPS
*
)
ptr
;
Error
*
error
=
lmp
->
error
;
if
(
error
->
get_last_error
())
{
strncpy
(
buffer
,
error
->
get_last_error
(),
buffer_size
-
1
);
error
->
set_last_error
(
NULL
);
return
1
;
}
return
0
;
}
This diff is collapsed.
Click to expand it.
src/library.h
+
3
−
0
View file @
fab2f01a
...
@@ -45,6 +45,9 @@ int lammps_get_natoms(void *);
...
@@ -45,6 +45,9 @@ int lammps_get_natoms(void *);
void
lammps_gather_atoms
(
void
*
,
char
*
,
int
,
int
,
void
*
);
void
lammps_gather_atoms
(
void
*
,
char
*
,
int
,
int
,
void
*
);
void
lammps_scatter_atoms
(
void
*
,
char
*
,
int
,
int
,
void
*
);
void
lammps_scatter_atoms
(
void
*
,
char
*
,
int
,
int
,
void
*
);
int
lammps_has_error
(
void
*
);
int
lammps_get_last_error_message
(
void
*
,
char
*
,
int
);
#ifdef __cplusplus
#ifdef __cplusplus
}
}
#endif
#endif
...
...
This diff is collapsed.
Click to expand it.
src/main.cpp
+
15
−
2
View file @
fab2f01a
...
@@ -14,7 +14,9 @@
...
@@ -14,7 +14,9 @@
#include
<mpi.h>
#include
<mpi.h>
#include
"lammps.h"
#include
"lammps.h"
#include
"input.h"
#include
"input.h"
#include
"error.h"
#include
<stdio.h>
#include
<stdio.h>
#include
<stdlib.h>
using
namespace
LAMMPS_NS
;
using
namespace
LAMMPS_NS
;
...
@@ -26,11 +28,22 @@ int main(int argc, char **argv)
...
@@ -26,11 +28,22 @@ int main(int argc, char **argv)
{
{
MPI_Init
(
&
argc
,
&
argv
);
MPI_Init
(
&
argc
,
&
argv
);
#ifdef LAMMPS_EXCEPTIONS
try
{
LAMMPS
*
lammps
=
new
LAMMPS
(
argc
,
argv
,
MPI_COMM_WORLD
);
lammps
->
input
->
file
();
delete
lammps
;
}
catch
(
LAMMPSAbortException
&
ae
)
{
MPI_Abort
(
ae
.
universe
,
1
);
}
catch
(
LAMMPSException
&
e
)
{
MPI_Finalize
();
exit
(
1
);
}
#else
LAMMPS
*
lammps
=
new
LAMMPS
(
argc
,
argv
,
MPI_COMM_WORLD
);
LAMMPS
*
lammps
=
new
LAMMPS
(
argc
,
argv
,
MPI_COMM_WORLD
);
lammps
->
input
->
file
();
lammps
->
input
->
file
();
delete
lammps
;
delete
lammps
;
#endif
MPI_Barrier
(
MPI_COMM_WORLD
);
MPI_Barrier
(
MPI_COMM_WORLD
);
MPI_Finalize
();
MPI_Finalize
();
}
}
This diff is collapsed.
Click to expand it.
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