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Created with Raphaël 2.2.09Aug876532131Jul3029282726252423222120191817161513121312111096543230Jun2928272625242221201918171615161514131298654131May3029282625242322212019181716151413121110more changes induced by removing Section_start.txtchanges to replace Section_start.txtMerge pull request #1042 from akohlmey/kokkos-vs-gpu-directadjust header levels for Tools sectionformatting tweak for Build the manual pageupdate src/lammps.book file with missing entriesfix a couple more broken linkscreate missing "Build_manual.txt" file from 'doc/README'fix a bunch of broken linke or make links unique across filesupdate .gitignoreMerge pull request #1043 from lammps/compute-cluster-atomchange zero-size shrink box to original boxrename Kokkos::gpu_direct to Kokkos::gpu_direct_flaguse '-pk kokkos gpu/direct on/off' consistently in comments and docsReplace functions which were deprecated since CUDA 5Small tweak to GPU direct not available warningGPU Package: Use __shfl_xor_sync starting with CUDA 9Fix typo in gridcomm_kokkosChange defaults for GPU-direct to use comm hostRemove hardcoded GPU-direct in KOKKOS packageadded examples for P3M with ScaFaCoSupdated log filesupdated to support ScaFaCoS 1.0.1removed deprecated log files (will be replaced with more current ones)Merge branch 'master' of https://www.github.com/lammps/lammps into port-enforce2d-kokkosMerge remote-tracking branch 'origin/master' into ScaFaCoSfixed merge conflictbug fix for compute cluster/atom when computing values used to update a dynamic groupMerge pull request #1038 from stanmoore1/issue-1037Merge pull request #1041 from rbberger/fix_gpu_segfaultMerge pull request #1040 from lammps/natomMerge pull request #994 from danicholson/user-uef-image-flagsadd some notes about GPU-direct support requirements to the manualadd wrapper for MPI implementation specific GPU-direct detectionmake communication settings consistent, in case the package command is used multiple times.reword misleading message about GPU usageAdd extra check for OpenCL timersenable more correct natoms computation when atoms are lostcleaned documentation, added p3m entry for allowed tolerance typeadded support for p3m, added check for compatible tolerance / method combinations (should they not be caught by ScaFaCoS itself)