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Created with Raphaël 2.2.010Mar9876532128Feb2726242322211715141310986432131Jan30282726252423201918171615141312111096543228Dec272423222120191615141312987Backport typo fixes that were not previously pushed to the Colvars repositoryUpdate Colvars module to version 2017-03-10Add Kokkos version of atom_vec_hybrid_kokkos, without CUDA supportAdd error check to lammps_gather_atoms/lammps_scatter_atoms in library.cppMakefile.lammps.gfortran for latteFix half from full nlist issue with KokkosFixing memory overflow issue in comm_kokkosFixing issue with ev_setup in pair_hybrid_kokkosrestore incorrect change due to spell checking in fix imdDisable allocation of per-atom arrays in ev_setup for USER-DPD Kokkos stylesMerge remote branch 'stanmoore1/ev_setup_kk' into USER-DPD_kokkos_ev_setup_bugfixDisable allocation of per-atom arrays in ev_setup for Kokkos stylesAdding alloc flag to ev_setupFix spelling "correction" from 3a054d1a: iterations not interactions. :-)Turn off use of OpenMP in MPIIO/dump_custom_mpiio.cpp if Kokkos is in use.Merge branch 'master' of https://github.com/lammps/lammps into USER-DPD_kokkospatch 7Mar17Merge pull request #393 from akohlmey/small-bugfixesMerge pull request #399 from rbberger/docs_spelling_fixesMerge pull request #398 from stanmoore1/kokkos_changesMerge pull request #395 from timattox/USER-DPD_bugfixMerge pull request #394 from jaapkroe/kolmogorov-crespiMerge pull request #389 from akohlmey/update-agni-potentialMerge pull request #386 from akohlmey/doc-consistentcyMerge pull request #376 from v0i0/airebo-bondorderLJ-fixesnew neigh_modify exclude option, other SNAP changesFix more typos in toolsFix typo in python READMEFix typos in txt2htmlFix more typos in examplesFix more typos in src filesThird batch of spelling fixes in manualAdd remaining false positivesMerge pull request #16 from ibaned/cuda-runtimedon't query device variables from the hostdon't use device views to measure dimensionsconsolidate sorting functionsdon't capture "this" in lambdasfix lambda syntax for CUDAMerge remote-tracking branch 'fork/cuda-compile' into cuda-runtime